WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... >TruSeq2_PE_r AGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG Read1 before filtering: total reads: 1966675 total bases: 283201200 Q20 bases: 272096643(96.0789%) Q30 bases: 254452085(89.8485%) Read1 after filtering: total reads: 1950821 total bases: 280081564 Q20 bases: 270207139(96.4744%) Q30 bases: 253032449(90.3424%) Filtering result: reads passed filter: 1950821 reads failed due to low quality: 3766 reads failed due to too many N: 567 reads failed due to too short: 11521 reads with adapter trimmed: 24284 bases trimmed due to adapters: 2130361 Duplication rate (may be overestimated since this is SE data): 31.8277% JSON report: CypressIslandWA_FG150.json HTML report: CypressIslandWA_FG150.html fastp -i CypressIslandWA_FG150.F.fq.gz -o CypressIslandWA_FG150.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG150.json -h CypressIslandWA_FG150.html fastp v0.20.0, time used: 22 seconds