WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 3394889 total bases: 488864016 Q20 bases: 469739810(96.088%) Q30 bases: 438614378(89.7211%) Read1 after filtering: total reads: 3387366 total bases: 487556229 Q20 bases: 469161763(96.2272%) Q30 bases: 438295279(89.8964%) Filtering result: reads passed filter: 3387366 reads failed due to low quality: 6598 reads failed due to too many N: 925 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 40.1051% JSON report: CypressIslandWA_FG133-SEQREP.json HTML report: CypressIslandWA_FG133-SEQREP.html fastp -i CypressIslandWA_FG133-SEQREP.F.fq.gz -o CypressIslandWA_FG133-SEQREP.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG133-SEQREP.json -h CypressIslandWA_FG133-SEQREP.html fastp v0.20.0, time used: 43 seconds