WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 6891101
total bases: 992318544
Q20 bases: 960553506(96.7989%)
Q30 bases: 919016592(92.6131%)

Read1 after filtering:
total reads: 6874870
total bases: 989975945
Q20 bases: 959271710(96.8985%)
Q30 bases: 918130983(92.7428%)

Filtering result:
reads passed filter: 6874870
reads failed due to low quality: 12058
reads failed due to too many N: 4173
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 66.576%

JSON report: CypressIslandWA_FG127.json
HTML report: CypressIslandWA_FG127.html

fastp -i CypressIslandWA_FG127.F.fq.gz -o CypressIslandWA_FG127.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG127.json -h CypressIslandWA_FG127.html 
fastp v0.20.0, time used: 71 seconds