WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... AAGCAGATGGATAACCGCATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGC Read1 before filtering: total reads: 2255148 total bases: 324741312 Q20 bases: 315204399(97.0632%) Q30 bases: 302087353(93.024%) Read1 after filtering: total reads: 2233725 total bases: 321628284 Q20 bases: 312471093(97.1529%) Q30 bases: 299573479(93.1428%) Filtering result: reads passed filter: 2233725 reads failed due to low quality: 3621 reads failed due to too many N: 1331 reads failed due to too short: 16471 reads with adapter trimmed: 20755 bases trimmed due to adapters: 2398286 Duplication rate (may be overestimated since this is SE data): 59.5047% JSON report: CypressIslandWA_FG119.json HTML report: CypressIslandWA_FG119.html fastp -i CypressIslandWA_FG119.F.fq.gz -o CypressIslandWA_FG119.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG119.json -h CypressIslandWA_FG119.html fastp v0.20.0, time used: 22 seconds