WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
TATTAATATCAAGTTGGGGGAGCACATTGTAGCATTGTGCCAATTCATCCATTAACTTCT

Read1 before filtering:
total reads: 2233950
total bases: 321688800
Q20 bases: 312502406(97.1443%)
Q30 bases: 299848516(93.2107%)

Read1 after filtering:
total reads: 2216444
total bases: 319105413
Q20 bases: 310274107(97.2325%)
Q30 bases: 297811986(93.3271%)

Filtering result:
reads passed filter: 2216444
reads failed due to low quality: 3470
reads failed due to too many N: 1371
reads failed due to too short: 12665
reads with adapter trimmed: 21988
bases trimmed due to adapters: 1884355

Duplication rate (may be overestimated since this is SE data): 59.5644%

JSON report: CypressIslandWA_FG117.json
HTML report: CypressIslandWA_FG117.html

fastp -i CypressIslandWA_FG117.F.fq.gz -o CypressIslandWA_FG117.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG117.json -h CypressIslandWA_FG117.html 
fastp v0.20.0, time used: 24 seconds