WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
AGGGTATCCTACAAAGTCCAGCGTACCATAAACGCAAGCCTCAACGCAGCGACGAGCACG

Read1 before filtering:
total reads: 1956115
total bases: 281680560
Q20 bases: 273771903(97.1923%)
Q30 bases: 262901836(93.3333%)

Read1 after filtering:
total reads: 1940472
total bases: 278864288
Q20 bases: 271258303(97.2725%)
Q30 bases: 260568888(93.4393%)

Filtering result:
reads passed filter: 1940472
reads failed due to low quality: 2864
reads failed due to too many N: 1132
reads failed due to too short: 11647
reads with adapter trimmed: 24135
bases trimmed due to adapters: 2239676

Duplication rate (may be overestimated since this is SE data): 63.0917%

JSON report: CypressIslandWA_FG112.json
HTML report: CypressIslandWA_FG112.html

fastp -i CypressIslandWA_FG112.F.fq.gz -o CypressIslandWA_FG112.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG112.json -h CypressIslandWA_FG112.html 
fastp v0.20.0, time used: 24 seconds