WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 11657632
total bases: 1678699008
Q20 bases: 1627192375(96.9318%)
Q30 bases: 1560627069(92.9665%)

Read1 after filtering:
total reads: 11606609
total bases: 1671345551
Q20 bases: 1623481742(97.1362%)
Q30 bases: 1557792469(93.2059%)

Filtering result:
reads passed filter: 11606609
reads failed due to low quality: 34527
reads failed due to too many N: 16496
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 66.466%

JSON report: CypressIslandWA_FG106.json
HTML report: CypressIslandWA_FG106.html

fastp -i CypressIslandWA_FG106.F.fq.gz -o CypressIslandWA_FG106.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG106.json -h CypressIslandWA_FG106.html 
fastp v0.20.0, time used: 111 seconds