WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
GTACGGGGAAGGACGTCAATAGTCACACAGTCCTTGACGGTATAATAACCACCATCATGG

Read1 before filtering:
total reads: 2410566
total bases: 347121504
Q20 bases: 336411507(96.9146%)
Q30 bases: 322874427(93.0148%)

Read1 after filtering:
total reads: 2373959
total bases: 341840875
Q20 bases: 331927321(97.1%)
Q30 bases: 318695301(93.2291%)

Filtering result:
reads passed filter: 2373959
reads failed due to low quality: 6864
reads failed due to too many N: 3354
reads failed due to too short: 26389
reads with adapter trimmed: 27563
bases trimmed due to adapters: 3807615

Duplication rate (may be overestimated since this is SE data): 74.5043%

JSON report: CypressIslandWA_FG102-B.json
HTML report: CypressIslandWA_FG102-B.html

fastp -i CypressIslandWA_FG102-B.F.fq.gz -o CypressIslandWA_FG102-B.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG102-B.json -h CypressIslandWA_FG102-B.html 
fastp v0.20.0, time used: 24 seconds