WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 7026920 total bases: 1011876480 Q20 bases: 982065858(97.0539%) Q30 bases: 942105761(93.1048%) Read1 after filtering: total reads: 6997314 total bases: 1007608621 Q20 bases: 979915555(97.2516%) Q30 bases: 940465914(93.3364%) Filtering result: reads passed filter: 6997314 reads failed due to low quality: 20072 reads failed due to too many N: 9534 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 72.1517% JSON report: CypressIslandWA_FG100-B.json HTML report: CypressIslandWA_FG100-B.html fastp -i CypressIslandWA_FG100-B.F.fq.gz -o CypressIslandWA_FG100-B.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG100-B.json -h CypressIslandWA_FG100-B.html fastp v0.20.0, time used: 71 seconds