WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 3589074 total bases: 516826656 Q20 bases: 501576477(97.0493%) Q30 bases: 473283869(91.575%) Read1 after filtering: total reads: 3575987 total bases: 514893996 Q20 bases: 500457784(97.1963%) Q30 bases: 472479843(91.7625%) Filtering result: reads passed filter: 3575987 reads failed due to low quality: 7923 reads failed due to too many N: 5164 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 69.4274% JSON report: CatalinaCA_arb1.json HTML report: CatalinaCA_arb1.html fastp -i CatalinaCA_arb1.F.fq.gz -o CatalinaCA_arb1.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_arb1.json -h CatalinaCA_arb1.html fastp v0.20.0, time used: 41 seconds