WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
GCAAGAGTAAACATAGTGCCATGCTCAGGAACAAAGAAACGCGGCACAGAATGTTTATAG

Read1 before filtering:
total reads: 2937661
total bases: 423023184
Q20 bases: 411037249(97.1666%)
Q30 bases: 394463485(93.2487%)

Read1 after filtering:
total reads: 2911626
total bases: 418503040
Q20 bases: 407382953(97.3429%)
Q30 bases: 391106481(93.4537%)

Filtering result:
reads passed filter: 2911626
reads failed due to low quality: 7319
reads failed due to too many N: 3868
reads failed due to too short: 14848
reads with adapter trimmed: 38537
bases trimmed due to adapters: 2906630

Duplication rate (may be overestimated since this is SE data): 67.5241%

JSON report: CatalinaCA_Q353.json
HTML report: CatalinaCA_Q353.html

fastp -i CatalinaCA_Q353.F.fq.gz -o CatalinaCA_Q353.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_Q353.json -h CatalinaCA_Q353.html 
fastp v0.20.0, time used: 27 seconds