WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
TATTAATATCAAGTTGGGGGAGCACATTGTAGCATTGTGCCAATTCATCCATTAACTTCT

Read1 before filtering:
total reads: 2018834
total bases: 290712096
Q20 bases: 282219599(97.0787%)
Q30 bases: 270541220(93.0616%)

Read1 after filtering:
total reads: 1999566
total bases: 287869519
Q20 bases: 279986244(97.2615%)
Q30 bases: 268518200(93.2777%)

Filtering result:
reads passed filter: 1999566
reads failed due to low quality: 5208
reads failed due to too many N: 2664
reads failed due to too short: 11396
reads with adapter trimmed: 20862
bases trimmed due to adapters: 1706502

Duplication rate (may be overestimated since this is SE data): 72.0886%

JSON report: CatalinaCA_Q352.json
HTML report: CatalinaCA_Q352.html

fastp -i CatalinaCA_Q352.F.fq.gz -o CatalinaCA_Q352.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_Q352.json -h CatalinaCA_Q352.html 
fastp v0.20.0, time used: 22 seconds