WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
ATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTT

Read1 before filtering:
total reads: 7769604
total bases: 1118822976
Q20 bases: 1087139955(97.1682%)
Q30 bases: 1043968238(93.3095%)

Read1 after filtering:
total reads: 7729492
total bases: 1112934992
Q20 bases: 1083545593(97.3593%)
Q30 bases: 1040968148(93.5336%)

Filtering result:
reads passed filter: 7729492
reads failed due to low quality: 21155
reads failed due to too many N: 10459
reads failed due to too short: 8498
reads with adapter trimmed: 26389
bases trimmed due to adapters: 1330595

Duplication rate (may be overestimated since this is SE data): 66.9692%

JSON report: CatalinaCA_Q339.json
HTML report: CatalinaCA_Q339.html

fastp -i CatalinaCA_Q339.F.fq.gz -o CatalinaCA_Q339.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_Q339.json -h CatalinaCA_Q339.html 
fastp v0.20.0, time used: 68 seconds