WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... AGGGTATCCTACAAAGTCCAGCGTACCATAAACGCAAGCCTCAACGCAGCGACGAGCACG Read1 before filtering: total reads: 2322290 total bases: 334409760 Q20 bases: 324632051(97.0761%) Q30 bases: 311469747(93.1401%) Read1 after filtering: total reads: 2301884 total bases: 330940972 Q20 bases: 321906252(97.27%) Q30 bases: 308995902(93.3689%) Filtering result: reads passed filter: 2301884 reads failed due to low quality: 6506 reads failed due to too many N: 3169 reads failed due to too short: 10731 reads with adapter trimmed: 24067 bases trimmed due to adapters: 2073738 Duplication rate (may be overestimated since this is SE data): 72.3821% JSON report: CatalinaCA_Q334.json HTML report: CatalinaCA_Q334.html fastp -i CatalinaCA_Q334.F.fq.gz -o CatalinaCA_Q334.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_Q334.json -h CatalinaCA_Q334.html fastp v0.20.0, time used: 27 seconds