WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 1670232 total bases: 240513408 Q20 bases: 232008847(96.464%) Q30 bases: 217144611(90.2838%) Read1 after filtering: total reads: 1668748 total bases: 240209832 Q20 bases: 231868637(96.5275%) Q30 bases: 217058773(90.3622%) Filtering result: reads passed filter: 1668748 reads failed due to low quality: 1007 reads failed due to too many N: 477 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 44.4428% JSON report: CatalinaCA_387.json HTML report: CatalinaCA_387.html fastp -i CatalinaCA_387.F.fq.gz -o CatalinaCA_387.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_387.json -h CatalinaCA_387.html fastp v0.20.0, time used: 27 seconds