WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2425608 total bases: 349287552 Q20 bases: 337883885(96.7352%) Q30 bases: 316949413(90.7417%) Read1 after filtering: total reads: 2423772 total bases: 348823204 Q20 bases: 337689331(96.8082%) Q30 bases: 316837170(90.8303%) Filtering result: reads passed filter: 2423772 reads failed due to low quality: 1171 reads failed due to too many N: 665 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 44.0832% JSON report: CatalinaCA_383.json HTML report: CatalinaCA_383.html fastp -i CatalinaCA_383.F.fq.gz -o CatalinaCA_383.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_383.json -h CatalinaCA_383.html fastp v0.20.0, time used: 33 seconds