WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2414335 total bases: 347664240 Q20 bases: 334088389(96.0951%) Q30 bases: 311997815(89.7411%) Read1 after filtering: total reads: 2409003 total bases: 346746416 Q20 bases: 333681982(96.2323%) Q30 bases: 311774436(89.9142%) Filtering result: reads passed filter: 2409003 reads failed due to low quality: 4689 reads failed due to too many N: 643 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 45.3056% JSON report: CatalinaCA_381.json HTML report: CatalinaCA_381.html fastp -i CatalinaCA_381.F.fq.gz -o CatalinaCA_381.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_381.json -h CatalinaCA_381.html fastp v0.20.0, time used: 32 seconds