WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2935180 total bases: 422665920 Q20 bases: 406983158(96.2896%) Q30 bases: 380442431(90.0102%) Read1 after filtering: total reads: 2929308 total bases: 421451528 Q20 bases: 406485105(96.4488%) Q30 bases: 380181044(90.2075%) Filtering result: reads passed filter: 2929308 reads failed due to low quality: 5028 reads failed due to too many N: 844 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 41.0762% JSON report: CatalinaCA_380.json HTML report: CatalinaCA_380.html fastp -i CatalinaCA_380.F.fq.gz -o CatalinaCA_380.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_380.json -h CatalinaCA_380.html fastp v0.20.0, time used: 37 seconds