WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 3140563
total bases: 452241072
Q20 bases: 435207384(96.2335%)
Q30 bases: 407521510(90.1116%)

Read1 after filtering:
total reads: 3133967
total bases: 451034671
Q20 bases: 434692583(96.3768%)
Q30 bases: 407246272(90.2916%)

Filtering result:
reads passed filter: 3133967
reads failed due to low quality: 5833
reads failed due to too many N: 763
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 44.2096%

JSON report: CatalinaCA_379.json
HTML report: CatalinaCA_379.html

fastp -i CatalinaCA_379.F.fq.gz -o CatalinaCA_379.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_379.json -h CatalinaCA_379.html 
fastp v0.20.0, time used: 38 seconds