CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 183992 58760 75.79 242752 2 195594 59145 76.78 254739 3 153580 56847 72.98 210427 4 145554 50322 74.31 195876 5 154860 52339 74.74 207199 6 151495 50635 74.95 202130 7 150209 52511 74.10 202720 8 152809 50787 75.06 203596 9 157439 49942 75.92 207381 10 166194 50505 76.69 216699 11 169155 50404 77.04 219559 12 169561 48570 77.73 218131 13 168409 48987 77.47 217396 14 165986 48420 77.42 214406 15 167107 48349 77.56 215456 16 168321 47943 77.83 216264 17 170152 48933 77.66 219085 18 174846 49609 77.90 224455 19 174284 48784 78.13 223068 20 177076 48828 78.39 225904 21 177944 47983 78.76 225927 22 175250 49198 78.08 224448 23 174363 48426 78.26 222789 24 177177 48466 78.52 225643 25 177223 48411 78.54 225634 26 177028 48461 78.51 225489 27 179113 48212 78.79 227325 28 178840 48058 78.82 226898 29 178463 48343 78.69 226806 30 180591 47875 79.05 228466 31 179265 47797 78.95 227062 32 180379 48256 78.89 228635 33 183539 48173 79.21 231712 34 178776 47884 78.87 226660 35 179128 48091 78.83 227219 36 178909 48114 78.81 227023 37 178351 47155 79.09 225506 38 178384 47619 78.93 226003 39 179456 46613 79.38 226069 40 176413 45843 79.37 222256 41 174174 46093 79.07 220267 42 173552 46108 79.01 219660 43 171963 45732 78.99 217695 44 171052 45846 78.86 216898 45 170616 45804 78.84 216420 46 168422 45675 78.67 214097 47 167835 44982 78.86 212817 48 166761 44957 78.77 211718 49 162570 44453 78.53 207023 50 161725 43919 78.64 205644 51 160547 43733 78.59 204280 52 157031 42808 78.58 199839 53 155942 42645 78.53 198587 54 155471 42515 78.53 197986 55 153531 42333 78.39 195864 56 151635 42029 78.30 193664 57 149147 41220 78.35 190367 58 147548 41238 78.16 188786 59 145566 40435 78.26 186001 60 143882 40461 78.05 184343 61 141188 40517 77.70 181705 62 139330 39175 78.05 178505 63 136095 39209 77.63 175304 64 134043 38211 77.82 172254 65 131601 38042 77.58 169643 66 130338 37374 77.72 167712 67 128032 36834 77.66 164866 68 126043 36625 77.48 162668 69 124575 35788 77.68 160363 70 122402 36182 77.18 158584 71 119236 35180 77.22 154416 72 117182 34883 77.06 152065 73 113872 34289 76.86 148161 74 111479 34133 76.56 145612 75 108444 34110 76.07 142554 76 104088 32750 76.07 136838 77 97855 31118 75.87 128973 78 86629 27724 75.76 114353 79 62608 20491 75.34 83099 80 19768 6067 76.52 25835 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 74814 283628 20.87 358442 2 43348 270444 13.81 313792 3 37266 263030 12.41 300296 4 33702 264486 11.30 298188 5 37979 274679 12.15 312658 6 38813 269546 12.59 308359 7 31459 284032 9.97 315491 8 31437 276639 10.20 308076 9 33901 283672 10.68 317573 10 31752 288303 9.92 320055 11 29142 280588 9.41 309730 12 28616 281065 9.24 309681 13 31890 287689 9.98 319579 14 28778 285954 9.14 314732 15 28350 290436 8.89 318786 16 29348 301283 8.88 330631 17 27540 305249 8.28 332789 18 28151 306919 8.40 335070 19 28859 310922 8.49 339781 20 27540 307090 8.23 334630 21 31613 307749 9.32 339362 22 28451 307988 8.46 336439 23 26397 307110 7.91 333507 24 26804 312504 7.90 339308 25 26595 320429 7.66 347024 26 26366 318330 7.65 344696 27 27628 319294 7.96 346922 28 25539 323250 7.32 348789 29 27026 320665 7.77 347691 30 25580 318336 7.44 343916 31 26500 322774 7.59 349274 32 24894 321449 7.19 346343 33 26086 321789 7.50 347875 34 25890 324867 7.38 350757 35 24105 322024 6.96 346129 36 25076 321301 7.24 346377 37 25045 324098 7.17 349143 38 23533 320583 6.84 344116 39 22452 319657 6.56 342109 40 22976 319481 6.71 342457 41 23064 314781 6.83 337845 42 22415 313470 6.67 335885 43 22728 315983 6.71 338711 44 21743 310432 6.55 332175 45 22776 307497 6.90 330273 46 21462 308494 6.50 329956 47 22309 304458 6.83 326767 48 21225 300757 6.59 321982 49 21327 300499 6.63 321826 50 20837 294030 6.62 314867 51 19405 292748 6.22 312153 52 19308 290621 6.23 309929 53 19762 287691 6.43 307453 54 19340 285040 6.35 304380 55 19520 282542 6.46 302062 56 18590 277567 6.28 296157 57 17992 274582 6.15 292574 58 18159 273671 6.22 291830 59 16783 268077 5.89 284860 60 17620 264453 6.25 282073 61 17589 262630 6.28 280219 62 16608 257342 6.06 273950 63 16370 253920 6.06 270290 64 15878 251005 5.95 266883 65 15512 245658 5.94 261170 66 15133 242539 5.87 257672 67 14532 241170 5.68 255702 68 14386 234235 5.79 248621 69 14480 231491 5.89 245971 70 13573 229248 5.59 242821 71 13386 223809 5.64 237195 72 13203 219849 5.67 233052 73 13749 219034 5.91 232783 74 13467 214383 5.91 227850 75 12899 209943 5.79 222842 76 13433 203822 6.18 217255 77 12473 189705 6.17 202178 78 12076 167864 6.71 179940 79 9867 118815 7.67 128682 80 4776 33679 12.42 38455 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 273651 913090 23.06 1186741 2 253583 923849 21.54 1177432 3 227904 912563 19.98 1140467 4 220463 897183 19.73 1117646 5 221251 940279 19.05 1161530 6 228776 894859 20.36 1123635 7 212979 888901 19.33 1101880 8 206839 879314 19.04 1086153 9 218912 884269 19.84 1103181 10 221753 891233 19.92 1112986 11 218063 907895 19.37 1125958 12 223561 922500 19.51 1146061 13 230373 932585 19.81 1162958 14 214616 952746 18.38 1167362 15 219953 966935 18.53 1186888 16 229278 968811 19.14 1198089 17 214806 972865 18.09 1187671 18 218384 980704 18.21 1199088 19 221273 974605 18.50 1195878 20 214784 981907 17.95 1196691 21 216780 986115 18.02 1202895 22 216374 981129 18.07 1197503 23 204757 988951 17.15 1193708 24 210836 1008293 17.29 1219129 25 212853 1008670 17.43 1221523 26 203731 1013590 16.74 1217321 27 213493 1015281 17.37 1228774 28 212663 1007104 17.43 1219767 29 204258 1006613 16.87 1210871 30 205218 1013091 16.84 1218309 31 202494 1006378 16.75 1208872 32 192638 1009054 16.03 1201692 33 194222 1009939 16.13 1204161 34 192293 1002265 16.10 1194558 35 186582 1003905 15.67 1190487 36 188941 1002856 15.85 1191797 37 188003 993653 15.91 1181656 38 182939 991538 15.58 1174477 39 176047 986659 15.14 1162706 40 177327 976835 15.36 1154162 41 169076 974011 14.79 1143087 42 166577 969598 14.66 1136175 43 167421 957921 14.88 1125342 44 157881 950140 14.25 1108021 45 157818 941489 14.36 1099307 46 152702 927707 14.13 1080409 47 147493 919635 13.82 1067128 48 146601 909804 13.88 1056405 49 143539 895846 13.81 1039385 50 138862 884101 13.57 1022963 51 134957 878864 13.31 1013821 52 133865 864606 13.41 998471 53 133089 857389 13.44 990478 54 125278 848123 12.87 973401 55 123396 834068 12.89 957464 56 116032 823226 12.35 939258 57 113997 812887 12.30 926884 58 111510 800687 12.22 912197 59 104638 788631 11.71 893269 60 105551 776491 11.97 882042 61 103756 761169 12.00 864925 62 94224 754272 11.10 848496 63 93807 743379 11.21 837186 64 90617 728796 11.06 819413 65 84657 717077 10.56 801734 66 84091 707638 10.62 791729 67 81564 695436 10.50 777000 68 80802 686335 10.53 767137 69 79362 674529 10.53 753891 70 75713 664590 10.23 740303 71 73028 652296 10.07 725324 72 71868 643071 10.05 714939 73 71902 630768 10.23 702670 74 66670 619894 9.71 686564 75 66386 607007 9.86 673393 76 65862 585685 10.11 651547 77 61839 550284 10.10 612123 78 56325 484954 10.41 541279 79 48926 349173 12.29 398099 80 24466 100538 19.57 125004 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 110099 63191 63.53 173290 2 98777 44748 68.82 143525 3 104485 41093 71.77 145578 4 85409 38147 69.13 123556 5 81926 35158 69.97 117084 6 80912 31510 71.97 112422 7 86257 36759 70.12 123016 8 80278 29978 72.81 110256 9 77422 28363 73.19 105785 10 79640 28904 73.37 108544 11 79241 28658 73.44 107899 12 75048 26820 73.67 101868 13 75883 25939 74.53 101822 14 74770 26155 74.08 100925 15 75336 25303 74.86 100639 16 73193 24430 74.98 97623 17 70962 24284 74.50 95246 18 67597 22274 75.22 89871 19 67596 22158 75.31 89754 20 65894 21976 74.99 87870 21 64763 20681 75.80 85444 22 63308 20058 75.94 83366 23 62432 20247 75.51 82679 24 61698 18790 76.65 80488 25 60939 19296 75.95 80235 26 59084 18532 76.12 77616 27 56160 17491 76.25 73651 28 57557 17545 76.64 75102 29 55395 16794 76.74 72189 30 53271 15864 77.05 69135 31 54526 16223 77.07 70749 32 52585 15619 77.10 68204 33 51366 14925 77.49 66291 34 52077 15038 77.59 67115 35 49679 14343 77.60 64022 36 47411 13661 77.63 61072 37 47629 13290 78.18 60919 38 46307 13178 77.85 59485 39 45431 12494 78.43 57925 40 46209 13069 77.95 59278 41 43307 12170 78.06 55477 42 41438 11466 78.33 52904 43 41381 11117 78.82 52498 44 40524 11152 78.42 51676 45 39224 10601 78.72 49825 46 38568 10615 78.42 49183 47 37978 10657 78.09 48635 48 36060 9680 78.84 45740 49 35664 9945 78.20 45609 50 34556 9532 78.38 44088 51 32865 9086 78.34 41951 52 32066 8900 78.27 40966 53 31455 8653 78.43 40108 54 30825 8462 78.46 39287 55 30555 8504 78.23 39059 56 29752 8357 78.07 38109 57 29717 8243 78.29 37960 58 27771 8017 77.60 35788 59 26869 7668 77.80 34537 60 25597 7423 77.52 33020 61 25406 7357 77.54 32763 62 24367 7132 77.36 31499 63 23962 6895 77.65 30857 64 23188 6682 77.63 29870 65 21936 6410 77.39 28346 66 21121 6363 76.85 27484 67 21138 6221 77.26 27359 68 20087 6215 76.37 26302 69 19729 5924 76.91 25653 70 19299 5958 76.41 25257 71 18640 5851 76.11 24491 72 17620 5741 75.42 23361 73 17274 5457 75.99 22731 74 16805 5671 74.77 22476 75 15587 5074 75.44 20661 76 15161 4996 75.21 20157 77 14457 4968 74.42 19425 78 13703 4779 74.14 18482 79 12360 4247 74.43 16607 80 8763 3189 73.32 11952 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18584 271619 6.40 290203 2 14536 230553 5.93 245089 3 17252 219954 7.27 237206 4 10420 203670 4.87 214090 5 10452 180980 5.46 191432 6 9885 175498 5.33 185383 7 9956 170202 5.53 180158 8 10445 181768 5.43 192213 9 9055 162030 5.29 171085 10 8808 155986 5.34 164794 11 9053 156187 5.48 165240 12 8853 159295 5.27 168148 13 8423 148513 5.37 156936 14 8444 145867 5.47 154311 15 8550 150749 5.37 159299 16 7831 143845 5.16 151676 17 7930 136624 5.49 144554 18 7726 140050 5.23 147776 19 7371 131511 5.31 138882 20 7305 129313 5.35 136618 21 7164 129977 5.22 137141 22 7018 122186 5.43 129204 23 6908 123813 5.28 130721 24 6896 122770 5.32 129666 25 6631 114922 5.46 121553 26 6642 111888 5.60 118530 27 6485 115632 5.31 122117 28 6519 109011 5.64 115530 29 6289 112268 5.30 118557 30 5601 105584 5.04 111185 31 5587 104675 5.07 110262 32 5518 102629 5.10 108147 33 5467 103059 5.04 108526 34 5242 94383 5.26 99625 35 5377 94951 5.36 100328 36 4935 93656 5.01 98591 37 4915 87357 5.33 92272 38 5168 87473 5.58 92641 39 5022 87832 5.41 92854 40 4925 83384 5.58 88309 41 4724 83347 5.36 88071 42 4237 81893 4.92 86130 43 4059 77690 4.97 81749 44 4077 74736 5.17 78813 45 3983 76065 4.98 80048 46 3847 72003 5.07 75850 47 3784 71451 5.03 75235 48 3692 68959 5.08 72651 49 3420 65976 4.93 69396 50 3450 64273 5.09 67723 51 3573 64744 5.23 68317 52 3433 60935 5.33 64368 53 3356 58690 5.41 62046 54 3368 58536 5.44 61904 55 2858 56517 4.81 59375 56 2803 55389 4.82 58192 57 2984 56470 5.02 59454 58 2719 52292 4.94 55011 59 2660 51430 4.92 54090 60 2507 50492 4.73 52999 61 2466 47675 4.92 50141 62 2423 46980 4.90 49403 63 2391 46632 4.88 49023 64 2490 43831 5.38 46321 65 2335 43170 5.13 45505 66 2244 42344 5.03 44588 67 2185 40531 5.12 42716 68 2213 39830 5.26 42043 69 2201 38328 5.43 40529 70 2069 37282 5.26 39351 71 2049 36169 5.36 38218 72 1909 35303 5.13 37212 73 1964 33690 5.51 35654 74 1834 32663 5.32 34497 75 1756 32920 5.06 34676 76 1683 30481 5.23 32164 77 1713 29209 5.54 30922 78 1507 28156 5.08 29663 79 1315 25294 4.94 26609 80 872 18332 4.54 19204 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 75373 879823 7.89 955196 2 56035 689206 7.52 745241 3 56729 657297 7.94 714026 4 48053 610594 7.30 658647 5 46333 552591 7.74 598924 6 43506 505109 7.93 548615 7 42183 498389 7.80 540572 8 42745 481497 8.15 524242 9 43180 487478 8.14 530658 10 41893 486362 7.93 528255 11 41331 447382 8.46 488713 12 40461 439325 8.43 479786 13 40028 443282 8.28 483310 14 39076 428498 8.36 467574 15 39243 428893 8.38 468136 16 38853 429036 8.30 467889 17 37808 412954 8.39 450762 18 37172 409326 8.33 446498 19 36603 406097 8.27 442700 20 35395 390185 8.32 425580 21 35190 384900 8.38 420090 22 34081 371920 8.39 406001 23 33602 365690 8.42 399292 24 33027 355944 8.49 388971 25 32021 353563 8.30 385584 26 30999 343396 8.28 374395 27 31058 334883 8.49 365941 28 30396 335289 8.31 365685 29 29972 321178 8.54 351150 30 29729 314282 8.64 344011 31 29722 323760 8.41 353482 32 28115 299409 8.58 327524 33 27546 293708 8.57 321254 34 27103 292050 8.49 319153 35 26586 284792 8.54 311378 36 25878 279009 8.49 304887 37 25108 276078 8.34 301186 38 24040 268142 8.23 292182 39 23818 262974 8.30 286792 40 23478 261126 8.25 284604 41 22691 252945 8.23 275636 42 22161 242864 8.36 265025 43 21807 241207 8.29 263014 44 20972 230050 8.35 251022 45 20701 222957 8.50 243658 46 20270 225235 8.26 245505 47 19675 217876 8.28 237551 48 19183 217563 8.10 236746 49 18430 216454 7.85 234884 50 17629 198569 8.15 216198 51 17306 194056 8.19 211362 52 16910 198314 7.86 215224 53 16206 180687 8.23 196893 54 15776 175152 8.26 190928 55 15951 172799 8.45 188750 56 15550 168700 8.44 184250 57 15357 169049 8.33 184406 58 14531 160751 8.29 175282 59 13957 160881 7.98 174838 60 13973 153018 8.37 166991 61 13604 147471 8.45 161075 62 12885 143268 8.25 156153 63 12404 140047 8.14 152451 64 11976 143025 7.73 155001 65 11972 133649 8.22 145621 66 11377 128477 8.13 139854 67 11197 127488 8.07 138685 68 10921 128972 7.81 139893 69 10581 123792 7.87 134373 70 10214 117196 8.02 127410 71 10186 114142 8.19 124328 72 9894 113396 8.02 123290 73 9546 106166 8.25 115712 74 9174 101373 8.30 110547 75 9019 98574 8.38 107593 76 8507 95790 8.16 104297 77 7793 91727 7.83 99520 78 7217 89048 7.50 96265 79 5912 81695 6.75 87607 80 3727 57199 6.12 60926