zr2096_8_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8881304 lines in total Total number of methylation call strings processed: 17762608 Final Cytosine Methylation Report ================================= Total number of C's analysed: 138668831 Total methylated C's in CpG context: 10553263 Total methylated C's in CHG context: 2096807 Total methylated C's in CHH context: 15783174 Total C to T conversions in CpG context: 4900827 Total C to T conversions in CHG context: 24826006 Total C to T conversions in CHH context: 80508754 C methylated in CpG context: 68.3% C methylated in CHG context: 7.8% C methylated in CHH context: 16.4%