CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 118473 53606 68.85 172079 2 130223 55938 69.95 186161 3 106011 54609 66.00 160620 4 101529 49967 67.02 151496 5 103489 51009 66.98 154498 6 104240 50783 67.24 155023 7 101750 50691 66.75 152441 8 104760 50777 67.35 155537 9 107329 50298 68.09 157627 10 110067 50453 68.57 160520 11 111832 50748 68.79 162580 12 112824 50180 69.22 163004 13 111394 49454 69.25 160848 14 111926 50534 68.89 162460 15 111738 49594 69.26 161332 16 112513 49684 69.37 162197 17 112496 50160 69.16 162656 18 115886 50995 69.44 166881 19 114340 50111 69.53 164451 20 116345 50135 69.89 166480 21 116208 50660 69.64 166868 22 115367 51018 69.34 166385 23 114795 50620 69.40 165415 24 116308 50826 69.59 167134 25 116912 50237 69.94 167149 26 116190 50658 69.64 166848 27 118667 50547 70.13 169214 28 117430 50758 69.82 168188 29 116395 50624 69.69 167019 30 118990 50895 70.04 169885 31 117023 50573 69.82 167596 32 117498 51180 69.66 168678 33 118856 50582 70.15 169438 34 116742 50852 69.66 167594 35 116495 50357 69.82 166852 36 116269 50224 69.83 166493 37 115724 49950 69.85 165674 38 115891 50257 69.75 166148 39 116107 49829 69.97 165936 40 114624 49090 70.01 163714 41 113032 48976 69.77 162008 42 113226 48613 69.96 161839 43 112017 47798 70.09 159815 44 110518 48585 69.46 159103 45 110145 48388 69.48 158533 46 109382 47727 69.62 157109 47 108473 47600 69.50 156073 48 107568 47717 69.27 155285 49 105747 46628 69.40 152375 50 104183 46737 69.03 150920 51 103425 46169 69.14 149594 52 101433 44889 69.32 146322 53 100403 44810 69.14 145213 54 100234 44148 69.42 144382 55 99030 44050 69.21 143080 56 97584 43624 69.11 141208 57 96221 43367 68.93 139588 58 94686 42888 68.83 137574 59 93004 42176 68.80 135180 60 92633 41810 68.90 134443 61 90203 41408 68.54 131611 62 88396 40728 68.46 129124 63 88244 40270 68.66 128514 64 85561 39541 68.39 125102 65 84934 39389 68.32 124323 66 83881 38600 68.48 122481 67 81923 37837 68.41 119760 68 80902 37268 68.46 118170 69 79313 36531 68.47 115844 70 78424 36242 68.39 114666 71 76203 35703 68.10 111906 72 75244 35538 67.92 110782 73 73788 34847 67.92 108635 74 71308 34941 67.11 106249 75 70209 33802 67.50 104011 76 67546 32917 67.23 100463 77 64171 30930 67.48 95101 78 56351 27673 67.07 84024 79 41662 20177 67.37 61839 80 13760 6190 68.97 19950 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 60774 230892 20.84 291666 2 37269 230327 13.93 267596 3 32417 224403 12.62 256820 4 30077 226897 11.70 256974 5 32922 227867 12.62 260789 6 33919 227689 12.97 261608 7 27195 237907 10.26 265102 8 27661 234207 10.56 261868 9 29673 236699 11.14 266372 10 27168 242517 10.07 269685 11 25469 239061 9.63 264530 12 25084 238476 9.52 263560 13 28305 242914 10.44 271219 14 25102 243747 9.34 268849 15 24583 246181 9.08 270764 16 25420 252226 9.16 277646 17 24051 254948 8.62 278999 18 24597 255073 8.80 279670 19 25292 258857 8.90 284149 20 23664 256288 8.45 279952 21 27300 257711 9.58 285011 22 24639 260988 8.63 285627 23 23327 257199 8.32 280526 24 23911 260759 8.40 284670 25 23225 265249 8.05 288474 26 22945 264453 7.98 287398 27 24195 265363 8.36 289558 28 22166 268423 7.63 290589 29 24185 266356 8.32 290541 30 22532 264160 7.86 286692 31 23842 268438 8.16 292280 32 21790 266436 7.56 288226 33 23353 265242 8.09 288595 34 23168 267848 7.96 291016 35 21620 267356 7.48 288976 36 22603 265940 7.83 288543 37 22630 267963 7.79 290593 38 20948 264100 7.35 285048 39 20351 264246 7.15 284597 40 20844 265048 7.29 285892 41 20845 261658 7.38 282503 42 20508 259699 7.32 280207 43 20588 260731 7.32 281319 44 19515 257223 7.05 276738 45 20906 254953 7.58 275859 46 19965 255054 7.26 275019 47 20159 250777 7.44 270936 48 19905 248264 7.42 268169 49 19664 249162 7.31 268826 50 19110 244591 7.25 263701 51 18411 241406 7.09 259817 52 17806 240704 6.89 258510 53 18445 237837 7.20 256282 54 18143 235666 7.15 253809 55 18079 233969 7.17 252048 56 16974 229607 6.88 246581 57 16703 227193 6.85 243896 58 16672 226510 6.86 243182 59 15829 221564 6.67 237393 60 16135 218508 6.88 234643 61 16455 216204 7.07 232659 62 15538 212084 6.83 227622 63 15299 210064 6.79 225363 64 14748 206440 6.67 221188 65 14319 203474 6.57 217793 66 13727 199515 6.44 213242 67 13836 198235 6.52 212071 68 13405 193624 6.47 207029 69 13590 191257 6.63 204847 70 12682 188053 6.32 200735 71 12638 184220 6.42 196858 72 12163 181280 6.29 193443 73 13117 179980 6.79 193097 74 12476 176069 6.62 188545 75 12561 171875 6.81 184436 76 12518 168201 6.93 180719 77 11762 158190 6.92 169952 78 11603 140572 7.62 152175 79 9931 100735 8.97 110666 80 5027 29543 14.54 34570 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 274297 810479 25.29 1084776 2 253899 825409 23.52 1079308 3 232114 808335 22.31 1040449 4 226525 804446 21.97 1030971 5 224857 814575 21.63 1039432 6 231739 801449 22.43 1033188 7 220759 790374 21.83 1011133 8 212724 789530 21.22 1002254 9 226532 793559 22.21 1020091 10 226616 798087 22.12 1024703 11 224576 813923 21.63 1038499 12 231991 826767 21.91 1058758 13 238087 825309 22.39 1063396 14 220015 844804 20.66 1064819 15 228518 854749 21.10 1083267 16 237365 853752 21.75 1091117 17 221125 860299 20.45 1081424 18 226145 867456 20.68 1093601 19 230863 866621 21.04 1097484 20 222892 873370 20.33 1096262 21 225912 876520 20.49 1102432 22 224421 868828 20.53 1093249 23 213777 867910 19.76 1081687 24 222531 879071 20.20 1101602 25 221943 883450 20.08 1105393 26 214279 885037 19.49 1099316 27 224483 890696 20.13 1115179 28 223276 884243 20.16 1107519 29 215022 885709 19.53 1100731 30 216162 890264 19.54 1106426 31 215543 882909 19.62 1098452 32 203574 887767 18.65 1091341 33 207511 881594 19.05 1089105 34 206430 878137 19.03 1084567 35 199643 882156 18.45 1081799 36 202757 879926 18.73 1082683 37 201934 874004 18.77 1075938 38 195686 872554 18.32 1068240 39 190389 868170 17.99 1058559 40 190512 861065 18.12 1051577 41 184520 856177 17.73 1040697 42 182401 854472 17.59 1036873 43 183604 842130 17.90 1025734 44 173056 837680 17.12 1010736 45 173000 827139 17.30 1000139 46 167559 815268 17.05 982827 47 162066 807470 16.72 969536 48 159715 801200 16.62 960915 49 158572 788612 16.74 947184 50 149790 780872 16.09 930662 51 148392 767758 16.20 916150 52 146137 762718 16.08 908855 53 145478 753739 16.18 899217 54 137492 744636 15.59 882128 55 136384 731322 15.72 867706 56 127477 720872 15.03 848349 57 126601 711873 15.10 838474 58 123130 700582 14.95 823712 59 115775 687987 14.40 803762 60 116384 679355 14.63 795739 61 115018 665387 14.74 780405 62 103447 655058 13.64 758505 63 103854 648781 13.80 752635 64 100365 636534 13.62 736899 65 94749 625262 13.16 720011 66 93397 618554 13.12 711951 67 91768 605719 13.16 697487 68 88835 597734 12.94 686569 69 87905 588755 12.99 676660 70 83597 577542 12.64 661139 71 80599 565872 12.47 646471 72 79022 558826 12.39 637848 73 79573 549054 12.66 628627 74 74148 540219 12.07 614367 75 74048 528004 12.30 602052 76 73339 513323 12.50 586662 77 69202 486755 12.45 555957 78 64608 433588 12.97 498196 79 57369 315785 15.37 373154 80 31573 96530 24.65 128103 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 68776 57473 54.48 126249 2 64430 41660 60.73 106090 3 70300 37505 65.21 107805 4 54235 35185 60.65 89420 5 53053 32842 61.76 85895 6 51696 30381 62.98 82077 7 56692 34478 62.18 91170 8 52664 29449 64.14 82113 9 50770 28043 64.42 78813 10 52054 28363 64.73 80417 11 52242 28829 64.44 81071 12 49456 27160 64.55 76616 13 49396 26130 65.40 75526 14 49577 25919 65.67 75496 15 49423 25121 66.30 74544 16 47639 24127 66.38 71766 17 46298 24432 65.46 70730 18 44619 22324 66.65 66943 19 44191 22565 66.20 66756 20 42930 21796 66.33 64726 21 42492 21026 66.90 63518 22 41603 20397 67.10 62000 23 40664 20143 66.87 60807 24 39848 19353 67.31 59201 25 40434 19452 67.52 59886 26 38420 19058 66.84 57478 27 36792 17788 67.41 54580 28 37315 17882 67.60 55197 29 35956 17369 67.43 53325 30 34988 16449 68.02 51437 31 35053 16855 67.53 51908 32 34344 16101 68.08 50445 33 33439 15464 68.38 48903 34 34648 15610 68.94 50258 35 32540 15091 68.32 47631 36 31568 14116 69.10 45684 37 31210 14148 68.81 45358 38 30471 13880 68.70 44351 39 29601 13417 68.81 43018 40 30073 13796 68.55 43869 41 28389 12947 68.68 41336 42 27415 12258 69.10 39673 43 27067 12130 69.05 39197 44 26171 11963 68.63 38134 45 25574 11340 69.28 36914 46 25399 11237 69.33 36636 47 24791 11376 68.55 36167 48 23751 10815 68.71 34566 49 23361 10672 68.64 34033 50 22533 10368 68.49 32901 51 21683 9658 69.18 31341 52 21545 9744 68.86 31289 53 20923 9574 68.61 30497 54 20419 9318 68.67 29737 55 20382 9343 68.57 29725 56 19874 9088 68.62 28962 57 19862 9006 68.80 28868 58 18782 8497 68.85 27279 59 18013 8358 68.31 26371 60 17302 8031 68.30 25333 61 17487 7979 68.67 25466 62 16475 7625 68.36 24100 63 16080 7529 68.11 23609 64 16026 7307 68.68 23333 65 15481 7264 68.06 22745 66 14878 6991 68.03 21869 67 14544 7118 67.14 21662 68 14091 6594 68.12 20685 69 13683 6661 67.26 20344 70 13359 6531 67.16 19890 71 13209 6394 67.38 19603 72 12693 6227 67.09 18920 73 12305 6147 66.69 18452 74 12103 6179 66.20 18282 75 11339 5615 66.88 16954 76 11134 5501 66.93 16635 77 10617 5526 65.77 16143 78 10243 5485 65.13 15728 79 9207 4807 65.70 14014 80 6550 3752 63.58 10302 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 16471 223383 6.87 239854 2 13752 191947 6.69 205699 3 16541 182227 8.32 198768 4 9671 171324 5.34 180995 5 9585 149532 6.02 159117 6 9433 146667 6.04 156100 7 9441 142214 6.23 151655 8 10218 154947 6.19 165165 9 8618 135660 5.97 144278 10 8556 131180 6.12 139736 11 8625 132283 6.12 140908 12 8434 134404 5.90 142838 13 8134 126446 6.04 134580 14 8223 123561 6.24 131784 15 8175 126823 6.06 134998 16 7644 119872 5.99 127516 17 7446 114373 6.11 121819 18 7565 115760 6.13 123325 19 6937 109051 5.98 115988 20 6972 107830 6.07 114802 21 6961 107689 6.07 114650 22 6639 101464 6.14 108103 23 6665 103809 6.03 110474 24 6369 101648 5.90 108017 25 6535 95785 6.39 102320 26 6510 93943 6.48 100453 27 6512 96303 6.33 102815 28 6436 91321 6.58 97757 29 5912 92143 6.03 98055 30 5655 88515 6.01 94170 31 5545 86947 6.00 92492 32 5345 85314 5.90 90659 33 5211 85889 5.72 91100 34 5169 80121 6.06 85290 35 5156 79657 6.08 84813 36 4886 77713 5.92 82599 37 4742 73237 6.08 77979 38 5084 73602 6.46 78686 39 4803 74097 6.09 78900 40 4777 70489 6.35 75266 41 4609 69796 6.19 74405 42 4056 69078 5.55 73134 43 4020 65755 5.76 69775 44 3982 63025 5.94 67007 45 3863 63633 5.72 67496 46 3752 60887 5.80 64639 47 3682 61080 5.69 64762 48 3578 58144 5.80 61722 49 3493 56223 5.85 59716 50 3276 54431 5.68 57707 51 3432 54816 5.89 58248 52 3404 52099 6.13 55503 53 3312 51036 6.09 54348 54 3274 50192 6.12 53466 55 2992 48877 5.77 51869 56 2782 47418 5.54 50200 57 2894 48619 5.62 51513 58 2709 44978 5.68 47687 59 2668 44427 5.67 47095 60 2618 44010 5.61 46628 61 2548 41450 5.79 43998 62 2350 40824 5.44 43174 63 2440 40552 5.68 42992 64 2423 38575 5.91 40998 65 2383 37963 5.91 40346 66 2516 37239 6.33 39755 67 2332 35893 6.10 38225 68 2248 35729 5.92 37977 69 2240 34260 6.14 36500 70 2175 33223 6.14 35398 71 2118 32411 6.13 34529 72 2029 31432 6.06 33461 73 1971 30513 6.07 32484 74 1880 29835 5.93 31715 75 1902 29809 6.00 31711 76 1783 28009 5.98 29792 77 1810 27320 6.21 29130 78 1663 26318 5.94 27981 79 1352 24148 5.30 25500 80 922 17664 4.96 18586 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 74245 747323 9.04 821568 2 58147 592457 8.94 650604 3 60023 564479 9.61 624502 4 51586 524889 8.95 576475 5 49007 480000 9.26 529007 6 47685 437882 9.82 485567 7 46789 428457 9.85 475246 8 46738 420832 10.00 467570 9 48331 425881 10.19 474212 10 47109 423009 10.02 470118 11 46095 390872 10.55 436967 12 45942 385670 10.64 431612 13 44907 388723 10.36 433630 14 44228 378891 10.45 423119 15 44631 379640 10.52 424271 16 43641 377029 10.37 420670 17 42447 366085 10.39 408532 18 41949 360238 10.43 402187 19 41369 352824 10.49 394193 20 40203 341117 10.54 381320 21 39659 336798 10.53 376457 22 38789 324450 10.68 363239 23 38403 322307 10.65 360710 24 37706 312389 10.77 350095 25 36705 310096 10.58 346801 26 35629 301647 10.56 337276 27 35634 295231 10.77 330865 28 34858 293446 10.62 328304 29 34355 284901 10.76 319256 30 33900 277106 10.90 311006 31 33814 283654 10.65 317468 32 31996 265429 10.76 297425 33 32016 258737 11.01 290753 34 30772 259319 10.61 290091 35 30298 253601 10.67 283899 36 29525 247196 10.67 276721 37 28673 244526 10.50 273199 38 27500 236955 10.40 264455 39 27271 233157 10.47 260428 40 27053 232070 10.44 259123 41 25827 226779 10.22 252606 42 25661 217848 10.54 243509 43 25394 215489 10.54 240883 44 24310 206453 10.53 230763 45 24044 199250 10.77 223294 46 23547 201778 10.45 225325 47 22739 195342 10.43 218081 48 22509 195865 10.31 218374 49 21601 193972 10.02 215573 50 20627 180113 10.28 200740 51 20255 174621 10.39 194876 52 19866 177667 10.06 197533 53 19238 164049 10.50 183287 54 19106 159251 10.71 178357 55 19096 158374 10.76 177470 56 18409 154546 10.64 172955 57 18409 153892 10.68 172301 58 17593 147900 10.63 165493 59 17027 148684 10.28 165711 60 16590 141666 10.48 158256 61 16379 135967 10.75 152346 62 15266 133586 10.26 148852 63 15107 131604 10.30 146711 64 14448 132371 9.84 146819 65 14107 124839 10.15 138946 66 13735 120814 10.21 134549 67 13531 119359 10.18 132890 68 13134 120537 9.83 133671 69 13093 116564 10.10 129657 70 12663 111484 10.20 124147 71 12475 109066 10.26 121541 72 12078 107876 10.07 119954 73 11776 102043 10.35 113819 74 11200 98224 10.24 109424 75 11063 95041 10.43 106104 76 10232 93266 9.89 103498 77 9677 90330 9.68 100007 78 8867 88482 9.11 97349 79 7224 82724 8.03 89948 80 4270 59278 6.72 63548