zr2096_7_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9510998 lines in total Total number of methylation call strings processed: 19021996 Final Cytosine Methylation Report ================================= Total number of C's analysed: 155753265 Total methylated C's in CpG context: 13485481 Total methylated C's in CHG context: 2435141 Total methylated C's in CHH context: 16681466 Total C to T conversions in CpG context: 4922686 Total C to T conversions in CHG context: 28205376 Total C to T conversions in CHH context: 90023115 C methylated in CpG context: 73.3% C methylated in CHG context: 7.9% C methylated in CHH context: 15.6%