CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 145521 55586 72.36 201107 2 161291 57093 73.86 218384 3 129892 55981 69.88 185873 4 124112 50600 71.04 174712 5 126930 51087 71.30 178017 6 129002 51252 71.57 180254 7 126705 52195 70.82 178900 8 128093 50450 71.74 178543 9 131094 49780 72.48 180874 10 135764 50519 72.88 186283 11 138184 50588 73.20 188772 12 137747 49805 73.44 187552 13 138956 48829 74.00 187785 14 138133 49844 73.48 187977 15 138464 49411 73.70 187875 16 138767 49529 73.70 188296 17 139081 49539 73.74 188620 18 142539 50192 73.96 192731 19 140715 48835 74.24 189550 20 143360 49617 74.29 192977 21 143281 49397 74.36 192678 22 142591 49922 74.07 192513 23 143301 49633 74.27 192934 24 144083 49335 74.49 193418 25 144287 49458 74.47 193745 26 144392 49074 74.63 193466 27 146492 49621 74.70 196113 28 145156 49356 74.63 194512 29 145097 49330 74.63 194427 30 148009 49150 75.07 197159 31 146373 49457 74.74 195830 32 146987 49442 74.83 196429 33 148329 49393 75.02 197722 34 145863 48801 74.93 194664 35 145541 49054 74.79 194595 36 144876 48520 74.91 193396 37 145440 48304 75.07 193744 38 145223 48778 74.86 194001 39 146468 48182 75.25 194650 40 143081 47614 75.03 190695 41 142272 47659 74.91 189931 42 142292 47354 75.03 189646 43 140126 46727 74.99 186853 44 140058 47370 74.73 187428 45 139318 47315 74.65 186633 46 137998 46471 74.81 184469 47 137333 46799 74.58 184132 48 136453 47099 74.34 183552 49 134361 45595 74.66 179956 50 133254 45920 74.37 179174 51 132200 45567 74.37 177767 52 129863 44153 74.63 174016 53 128492 44024 74.48 172516 54 128631 43648 74.66 172279 55 126845 43469 74.48 170314 56 125811 43902 74.13 169713 57 123242 42606 74.31 165848 58 121466 42245 74.20 163711 59 119388 42216 73.88 161604 60 119470 41251 74.33 160721 61 116977 41573 73.78 158550 62 115029 40377 74.02 155406 63 113381 40035 73.90 153416 64 111766 39684 73.80 151450 65 109649 38983 73.77 148632 66 108444 38940 73.58 147384 67 106954 37765 73.90 144719 68 105112 37714 73.59 142826 69 104052 37149 73.69 141201 70 102314 36461 73.73 138775 71 99844 35779 73.62 135623 72 98605 35711 73.41 134316 73 96120 35072 73.27 131192 74 93220 35324 72.52 128544 75 91430 34625 72.53 126055 76 88687 33473 72.60 122160 77 83806 32146 72.28 115952 78 74648 28193 72.59 102841 79 54859 21144 72.18 76003 80 18142 6543 73.49 24685 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 70183 258749 21.34 328932 2 42032 256433 14.08 298465 3 36185 249637 12.66 285822 4 33771 252481 11.80 286252 5 36807 253526 12.68 290333 6 38853 254103 13.26 292956 7 31021 264489 10.50 295510 8 31317 257404 10.85 288721 9 33803 261632 11.44 295435 10 30816 268271 10.30 299087 11 28882 263925 9.86 292807 12 28347 264443 9.68 292790 13 31674 270633 10.48 302307 14 28868 270345 9.65 299213 15 27788 270816 9.31 298604 16 29000 278638 9.43 307638 17 27436 280489 8.91 307925 18 28069 280809 9.09 308878 19 28848 285851 9.17 314699 20 27456 283579 8.83 311035 21 30983 284354 9.83 315337 22 28115 288639 8.88 316754 23 26222 286148 8.39 312370 24 26627 288211 8.46 314838 25 26115 294135 8.15 320250 26 26165 292990 8.20 319155 27 27801 295311 8.60 323112 28 25489 298193 7.87 323682 29 27682 296296 8.54 323978 30 25834 294606 8.06 320440 31 26674 298212 8.21 324886 32 24501 296039 7.64 320540 33 26501 296119 8.21 322620 34 26384 299777 8.09 326161 35 24319 296491 7.58 320810 36 25460 296806 7.90 322266 37 25742 298534 7.94 324276 38 23802 295676 7.45 319478 39 23167 294550 7.29 317717 40 23504 296596 7.34 320100 41 23251 292904 7.35 316155 42 22892 290346 7.31 313238 43 23252 291638 7.38 314890 44 21838 288357 7.04 310195 45 23522 285838 7.60 309360 46 22473 287553 7.25 310026 47 23093 282967 7.55 306060 48 22426 280791 7.40 303217 49 22497 280274 7.43 302771 50 21337 275289 7.19 296626 51 20863 271654 7.13 292517 52 20027 272120 6.86 292147 53 20580 269609 7.09 290189 54 20612 266456 7.18 287068 55 20703 265800 7.23 286503 56 19818 260981 7.06 280799 57 19184 257289 6.94 276473 58 19658 256790 7.11 276448 59 18213 251072 6.76 269285 60 18934 250494 7.03 269428 61 18965 246946 7.13 265911 62 18383 241253 7.08 259636 63 18485 238868 7.18 257353 64 17342 236652 6.83 253994 65 17419 232749 6.96 250168 66 16356 229172 6.66 245528 67 16611 227019 6.82 243630 68 15932 222504 6.68 238436 69 16682 218627 7.09 235309 70 15019 216936 6.47 231955 71 15050 211367 6.65 226417 72 14650 208269 6.57 222919 73 15323 206526 6.91 221849 74 15135 203597 6.92 218732 75 15033 197780 7.06 212813 76 15148 193648 7.25 208796 77 14377 182770 7.29 197147 78 14074 161696 8.01 175770 79 11688 116897 9.09 128585 80 5770 34287 14.40 40057 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 283393 876989 24.42 1160382 2 263394 885150 22.93 1148544 3 238299 867993 21.54 1106292 4 230164 863473 21.05 1093637 5 232243 880144 20.88 1112387 6 238969 858512 21.77 1097481 7 224140 852865 20.81 1077005 8 218464 846256 20.52 1064720 9 230367 853353 21.26 1083720 10 230338 859486 21.14 1089824 11 229429 876357 20.75 1105786 12 235861 887429 21.00 1123290 13 240879 890744 21.29 1131623 14 225234 907666 19.88 1132900 15 232289 918760 20.18 1151049 16 240340 918444 20.74 1158784 17 224863 924763 19.56 1149626 18 229194 933746 19.71 1162940 19 232943 935076 19.94 1168019 20 227406 943984 19.41 1171390 21 227957 948599 19.37 1176556 22 228305 942248 19.50 1170553 23 219044 942256 18.86 1161300 24 225904 953283 19.16 1179187 25 226902 958229 19.15 1185131 26 219394 962765 18.56 1182159 27 228362 966526 19.11 1194888 28 227964 964390 19.12 1192354 29 220534 963241 18.63 1183775 30 221113 969626 18.57 1190739 31 220694 965078 18.61 1185772 32 209285 969468 17.75 1178753 33 213792 965216 18.13 1179008 34 211139 960996 18.01 1172135 35 206509 966511 17.60 1173020 36 207986 966205 17.71 1174191 37 206463 960233 17.70 1166696 38 203864 959224 17.53 1163088 39 195691 955261 17.00 1150952 40 196581 948195 17.17 1144776 41 190645 943204 16.81 1133849 42 188444 941938 16.67 1130382 43 191331 930252 17.06 1121583 44 180558 924347 16.34 1104905 45 180814 917034 16.47 1097848 46 176454 905034 16.32 1081488 47 170874 896138 16.01 1067012 48 168511 892146 15.89 1060657 49 166143 878604 15.90 1044747 50 158674 870850 15.41 1029524 51 156784 855642 15.49 1012426 52 156988 851375 15.57 1008363 53 155499 842634 15.58 998133 54 147375 834596 15.01 981971 55 147057 820489 15.20 967546 56 138893 811178 14.62 950071 57 135906 800715 14.51 936621 58 133609 790412 14.46 924021 59 126357 775577 14.01 901934 60 126618 766850 14.17 893468 61 124457 753732 14.17 878189 62 114444 742424 13.36 856868 63 113045 736289 13.31 849334 64 110304 723710 13.23 834014 65 104390 710891 12.80 815281 66 103156 702270 12.81 805426 67 101219 690433 12.79 791652 68 99151 680725 12.71 779876 69 97541 671309 12.69 768850 70 93298 657738 12.42 751036 71 90490 647146 12.27 737636 72 88216 639839 12.12 728055 73 89990 629600 12.51 719590 74 83297 619909 11.85 703206 75 83335 606876 12.07 690211 76 82501 588314 12.30 670815 77 77424 559974 12.15 637398 78 72188 497086 12.68 569274 79 63264 364885 14.78 428149 80 33723 110600 23.37 144323 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 86896 59528 59.35 146424 2 83805 43320 65.92 127125 3 92800 40271 69.74 133071 4 71282 37680 65.42 108962 5 69283 34508 66.75 103791 6 68234 31896 68.15 100130 7 73902 35890 67.31 109792 8 69450 30785 69.29 100235 9 67182 29672 69.36 96854 10 69247 29920 69.83 99167 11 68495 30095 69.47 98590 12 65772 28869 69.50 94641 13 65187 27279 70.50 92466 14 65839 27523 70.52 93362 15 65103 26262 71.26 91365 16 64091 25424 71.60 89515 17 61551 25303 70.87 86854 18 59124 23449 71.60 82573 19 58701 23113 71.75 81814 20 57849 22855 71.68 80704 21 56878 21962 72.14 78840 22 54938 21556 71.82 76494 23 54536 20847 72.35 75383 24 53605 20072 72.76 73677 25 53682 20566 72.30 74248 26 52053 19568 72.68 71621 27 49710 18522 72.85 68232 28 49843 18780 72.63 68623 29 48746 18149 72.87 66895 30 46758 16710 73.67 63468 31 47735 17321 73.38 65056 32 46280 16375 73.86 62655 33 45021 16028 73.75 61049 34 46109 16197 74.00 62306 35 44157 15411 74.13 59568 36 41781 14767 73.89 56548 37 41727 14699 73.95 56426 38 41222 14367 74.15 55589 39 40159 14118 73.99 54277 40 40572 14479 73.70 55051 41 38360 13400 74.11 51760 42 36920 12697 74.41 49617 43 36717 12673 74.34 49390 44 35940 12225 74.62 48165 45 34899 11811 74.71 46710 46 34424 11847 74.40 46271 47 33880 11916 73.98 45796 48 32072 11114 74.26 43186 49 31924 10979 74.41 42903 50 30664 10794 73.96 41458 51 29603 10055 74.65 39658 52 29717 10242 74.37 39959 53 28678 9888 74.36 38566 54 28037 9726 74.24 37763 55 28002 9623 74.42 37625 56 27159 9611 73.86 36770 57 27184 9606 73.89 36790 58 25783 8924 74.29 34707 59 24741 8881 73.59 33622 60 23791 8330 74.07 32121 61 23505 8286 73.94 31791 62 22953 8056 74.02 31009 63 22221 7885 73.81 30106 64 21716 7714 73.79 29430 65 20992 7494 73.69 28486 66 19822 7345 72.96 27167 67 20181 7225 73.64 27406 68 19307 7017 73.34 26324 69 18609 6764 73.34 25373 70 18223 6970 72.33 25193 71 18248 6784 72.90 25032 72 17012 6581 72.11 23593 73 16829 6508 72.11 23337 74 16714 6329 72.53 23043 75 15659 5944 72.49 21603 76 14739 5853 71.58 20592 77 14454 5786 71.41 20240 78 13928 5803 70.59 19731 79 12282 5222 70.17 17504 80 9155 4008 69.55 13163 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 19079 248215 7.14 267294 2 16338 218068 6.97 234406 3 21303 209881 9.21 231184 4 12230 201842 5.71 214072 5 11565 172703 6.28 184268 6 11346 170276 6.25 181622 7 11573 165953 6.52 177526 8 12729 181125 6.57 193854 9 10707 156658 6.40 167365 10 10405 153673 6.34 164078 11 10379 155086 6.27 165465 12 10405 158387 6.16 168792 13 9762 148900 6.15 158662 14 9836 144711 6.36 154547 15 10012 149715 6.27 159727 16 9333 141520 6.19 150853 17 9241 135894 6.37 145135 18 9025 137669 6.15 146694 19 8633 128241 6.31 136874 20 8483 126250 6.30 134733 21 8391 127136 6.19 135527 22 8120 119926 6.34 128046 23 8104 122038 6.23 130142 24 7916 120208 6.18 128124 25 7971 113077 6.58 121048 26 8017 111044 6.73 119061 27 8038 113414 6.62 121452 28 7954 107541 6.89 115495 29 7160 110016 6.11 117176 30 6814 103901 6.15 110715 31 6833 103637 6.19 110470 32 6571 101161 6.10 107732 33 6590 101598 6.09 108188 34 6155 95059 6.08 101214 35 6248 94496 6.20 100744 36 6122 91931 6.24 98053 37 5886 86971 6.34 92857 38 5975 86422 6.47 92397 39 5962 87312 6.39 93274 40 5836 83398 6.54 89234 41 5674 83077 6.39 88751 42 5293 81200 6.12 86493 43 4863 78240 5.85 83103 44 5005 75552 6.21 80557 45 4787 75436 5.97 80223 46 4743 72423 6.15 77166 47 4529 72130 5.91 76659 48 4602 69464 6.21 74066 49 4326 66933 6.07 71259 50 4194 64909 6.07 69103 51 4271 65103 6.16 69374 52 4237 61919 6.40 66156 53 4112 60396 6.37 64508 54 4172 59710 6.53 63882 55 3695 57996 5.99 61691 56 3587 57149 5.91 60736 57 3625 57634 5.92 61259 58 3298 53873 5.77 57171 59 3312 53011 5.88 56323 60 3175 52877 5.66 56052 61 3256 49508 6.17 52764 62 3107 48550 6.01 51657 63 2989 48514 5.80 51503 64 3099 45902 6.32 49001 65 3123 45425 6.43 48548 66 3016 44543 6.34 47559 67 2847 42677 6.25 45524 68 2738 42261 6.08 44999 69 2780 40536 6.42 43316 70 2778 39814 6.52 42592 71 2668 38873 6.42 41541 72 2507 37867 6.21 40374 73 2520 36615 6.44 39135 74 2410 35671 6.33 38081 75 2347 35681 6.17 38028 76 2230 33814 6.19 36044 77 2289 32711 6.54 35000 78 2110 31848 6.21 33958 79 1761 29302 5.67 31063 80 1161 21458 5.13 22619 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 81736 828716 8.98 910452 2 66498 668486 9.05 734984 3 69578 642648 9.77 712226 4 58427 603021 8.83 661448 5 56799 549260 9.37 606059 6 54293 502871 9.74 557164 7 53862 493963 9.83 547825 8 54095 483946 10.05 538041 9 55587 490002 10.19 545589 10 54449 488972 10.02 543421 11 53118 453313 10.49 506431 12 52094 449722 10.38 501816 13 51585 451685 10.25 503270 14 50714 442830 10.28 493544 15 50927 442053 10.33 492980 16 50200 440667 10.23 490867 17 49388 427869 10.35 477257 18 48058 422477 10.21 470535 19 47284 413761 10.26 461045 20 46399 400081 10.39 446480 21 45587 392705 10.40 438292 22 44740 379380 10.55 424120 23 43979 376258 10.47 420237 24 43051 365728 10.53 408779 25 42179 362470 10.42 404649 26 41007 353465 10.40 394472 27 40890 345337 10.59 386227 28 40086 343553 10.45 383639 29 39587 332768 10.63 372355 30 39420 324754 10.82 364174 31 38973 333091 10.47 372064 32 36873 311039 10.60 347912 33 36657 304078 10.76 340735 34 35669 304182 10.50 339851 35 34696 297952 10.43 332648 36 33993 291512 10.44 325505 37 32702 288646 10.18 321348 38 32029 279590 10.28 311619 39 31385 273921 10.28 305306 40 31159 273369 10.23 304528 41 30411 266420 10.25 296831 42 29425 256689 10.28 286114 43 29096 253722 10.29 282818 44 27777 243089 10.25 270866 45 27636 236540 10.46 264176 46 26752 238225 10.10 264977 47 26244 230565 10.22 256809 48 26011 230537 10.14 256548 49 25028 228683 9.86 253711 50 23957 213187 10.10 237144 51 23015 206808 10.01 229823 52 22742 209796 9.78 232538 53 22160 194326 10.24 216486 54 21896 188666 10.40 210562 55 21904 188046 10.43 209950 56 20984 183016 10.29 204000 57 21071 182118 10.37 203189 58 19995 174697 10.27 194692 59 19609 175499 10.05 195108 60 19273 168105 10.29 187378 61 18830 161326 10.45 180156 62 18235 157328 10.39 175563 63 17771 154746 10.30 172517 64 16807 157413 9.65 174220 65 16343 148441 9.92 164784 66 16174 142713 10.18 158887 67 15815 142140 10.01 157955 68 15235 143172 9.62 158407 69 14935 138541 9.73 153476 70 14417 131661 9.87 146078 71 14191 128943 9.91 143134 72 13857 128053 9.76 141910 73 13490 120685 10.05 134175 74 12848 115629 10.00 128477 75 12475 112084 10.02 124559 76 11987 110087 9.82 122074 77 11065 107087 9.37 118152 78 10046 104816 8.75 114862 79 8312 97177 7.88 105489 80 5235 70693 6.89 75928