CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 136547 50635 72.95 187182 2 149890 52733 73.97 202623 3 122741 51315 70.52 174056 4 117317 46269 71.72 163586 5 119270 46067 72.14 165337 6 120852 46014 72.42 166866 7 117770 46167 71.84 163937 8 120816 45838 72.50 166654 9 123019 45312 73.08 168331 10 128394 45260 73.94 173654 11 131726 45931 74.15 177657 12 132668 45175 74.60 177843 13 131695 44580 74.71 176275 14 130481 45146 74.29 175627 15 130240 44833 74.39 175073 16 131723 44183 74.88 175906 17 131342 44406 74.73 175748 18 133956 45038 74.84 178994 19 133221 44690 74.88 177911 20 135400 44593 75.23 179993 21 135454 44418 75.31 179872 22 134163 45000 74.88 179163 23 134823 44960 74.99 179783 24 135295 44444 75.27 179739 25 135965 44235 75.45 180200 26 135889 44760 75.22 180649 27 137697 44512 75.57 182209 28 135390 44048 75.45 179438 29 136123 43998 75.57 180121 30 137011 44718 75.39 181729 31 135752 43727 75.64 179479 32 136291 44503 75.38 180794 33 138173 44265 75.74 182438 34 134806 43772 75.49 178578 35 134522 43829 75.43 178351 36 134393 43650 75.48 178043 37 133262 43294 75.48 176556 38 133084 42946 75.60 176030 39 133644 41848 76.15 175492 40 131430 42091 75.74 173521 41 129666 41710 75.66 171376 42 129592 41594 75.70 171186 43 127012 40941 75.62 167953 44 125989 41047 75.43 167036 45 125690 40920 75.44 166610 46 124881 40759 75.39 165640 47 122777 39970 75.44 162747 48 121861 39768 75.40 161629 49 119287 39512 75.12 158799 50 117865 39170 75.06 157035 51 115723 38663 74.96 154386 52 113562 37686 75.08 151248 53 113237 37243 75.25 150480 54 112056 37256 75.05 149312 55 110611 36777 75.05 147388 56 109592 36179 75.18 145771 57 107449 35866 74.97 143315 58 105570 35271 74.96 140841 59 103319 34570 74.93 137889 60 102321 34246 74.92 136567 61 99379 33912 74.56 133291 62 98156 33178 74.74 131334 63 96291 32522 74.75 128813 64 94374 32051 74.65 126425 65 92025 31356 74.59 123381 66 90956 31137 74.50 122093 67 89200 30169 74.73 119369 68 87421 29734 74.62 117155 69 86338 29473 74.55 115811 70 84880 29184 74.41 114064 71 82410 28740 74.14 111150 72 80473 28511 73.84 108984 73 78656 27684 73.97 106340 74 76661 27894 73.32 104555 75 74732 27022 73.44 101754 76 71687 26266 73.19 97953 77 68004 24968 73.14 92972 78 60592 21841 73.50 82433 79 44229 16334 73.03 60563 80 14573 5088 74.12 19661 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 60050 230617 20.66 290667 2 37244 231522 13.86 268766 3 31334 225299 12.21 256633 4 29145 227773 11.34 256918 5 31890 226800 12.33 258690 6 32472 226661 12.53 259133 7 26763 236700 10.16 263463 8 26836 233700 10.30 260536 9 29052 235869 10.97 264921 10 26347 243834 9.75 270181 11 24870 240297 9.38 265167 12 24554 241845 9.22 266399 13 27168 245006 9.98 272174 14 24319 244523 9.05 268842 15 23928 246362 8.85 270290 16 24272 251747 8.79 276019 17 22926 253358 8.30 276284 18 23533 254917 8.45 278450 19 24008 260330 8.44 284338 20 22783 259425 8.07 282208 21 26564 259494 9.29 286058 22 23911 261916 8.37 285827 23 22317 259917 7.91 282234 24 22135 260637 7.83 282772 25 22092 266113 7.67 288205 26 21979 265417 7.65 287396 27 23226 265858 8.03 289084 28 21436 267794 7.41 289230 29 23279 266830 8.02 290109 30 22136 264625 7.72 286761 31 23217 267233 7.99 290450 32 21435 264775 7.49 286210 33 22627 265268 7.86 287895 34 22550 267019 7.79 289569 35 20757 265208 7.26 285965 36 21965 263636 7.69 285601 37 21910 264198 7.66 286108 38 20238 261447 7.18 281685 39 19501 261724 6.93 281225 40 20107 261316 7.14 281423 41 19827 257596 7.15 277423 42 19490 254917 7.10 274407 43 20124 255071 7.31 275195 44 18854 251711 6.97 270565 45 19833 248825 7.38 268658 46 18667 247621 7.01 266288 47 19692 245532 7.42 265224 48 18445 241217 7.10 259662 49 18720 240356 7.23 259076 50 17611 236408 6.93 254019 51 17373 230815 7.00 248188 52 16760 231454 6.75 248214 53 17056 227376 6.98 244432 54 16572 225222 6.85 241794 55 16870 223365 7.02 240235 56 16210 219175 6.89 235385 57 15672 215194 6.79 230866 58 15596 213943 6.79 229539 59 14690 209092 6.56 223782 60 15161 205369 6.87 220530 61 14946 203088 6.85 218034 62 14195 198197 6.68 212392 63 14383 195404 6.86 209787 64 13621 193166 6.59 206787 65 12945 189025 6.41 201970 66 12351 185296 6.25 197647 67 12355 183423 6.31 195778 68 12222 178145 6.42 190367 69 12136 176028 6.45 188164 70 11318 173367 6.13 184685 71 11109 168654 6.18 179763 72 10744 164557 6.13 175301 73 11445 164057 6.52 175502 74 11118 160147 6.49 171265 75 11284 156638 6.72 167922 76 10907 151805 6.70 162712 77 10260 143463 6.67 153723 78 10375 126408 7.59 136783 79 8863 90738 8.90 99601 80 4572 26832 14.56 31404 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 269152 797213 25.24 1066365 2 249165 815609 23.40 1064774 3 227129 799066 22.13 1026195 4 220436 796799 21.67 1017235 5 222837 798894 21.81 1021731 6 226588 790570 22.28 1017158 7 214075 780482 21.52 994557 8 208217 774564 21.19 982781 9 221013 778820 22.10 999833 10 221129 788366 21.90 1009495 11 222543 806910 21.62 1029453 12 227168 817259 21.75 1044427 13 233247 821907 22.11 1055154 14 217959 838466 20.63 1056425 15 225763 849170 21.00 1074933 16 231903 853212 21.37 1085115 17 219078 862237 20.26 1081315 18 221856 871765 20.29 1093621 19 227061 871392 20.67 1098453 20 220154 879432 20.02 1099586 21 221062 878344 20.11 1099406 22 221148 872284 20.23 1093432 23 210637 871292 19.47 1081929 24 217258 879508 19.81 1096766 25 218371 881447 19.86 1099818 26 211637 885715 19.29 1097352 27 220510 890456 19.85 1110966 28 219429 885130 19.87 1104559 29 211255 884857 19.27 1096112 30 211841 887595 19.27 1099436 31 207914 880264 19.11 1088178 32 198360 881231 18.37 1079591 33 200671 876468 18.63 1077139 34 199075 870171 18.62 1069246 35 194388 870883 18.25 1065271 36 195235 869416 18.34 1064651 37 193812 860047 18.39 1053859 38 188662 857298 18.04 1045960 39 182238 851328 17.63 1033566 40 181507 842065 17.73 1023572 41 174794 836745 17.28 1011539 42 172494 832419 17.17 1004913 43 172459 817387 17.42 989846 44 162543 810712 16.70 973255 45 161520 799965 16.80 961485 46 156572 787258 16.59 943830 47 150758 775454 16.28 926212 48 147968 768861 16.14 916829 49 145575 755752 16.15 901327 50 138715 744462 15.71 883177 51 135406 728803 15.67 864209 52 133707 724354 15.58 858061 53 133539 712391 15.79 845930 54 125230 704351 15.10 829581 55 123010 689148 15.15 812158 56 114921 677759 14.50 792680 57 112134 666135 14.41 778269 58 109336 654441 14.32 763777 59 102662 639273 13.84 741935 60 101965 630430 13.92 732395 61 101121 618164 14.06 719285 62 91335 605825 13.10 697160 63 89685 597300 13.05 686985 64 86788 584521 12.93 671309 65 82102 572828 12.54 654930 66 79568 563019 12.38 642587 67 77815 551929 12.36 629744 68 76455 541309 12.38 617764 69 75008 531265 12.37 606273 70 71354 520378 12.06 591732 71 68573 508677 11.88 577250 72 65913 502315 11.60 568228 73 66913 490064 12.01 556977 74 62329 480969 11.47 543298 75 61589 470671 11.57 532260 76 61104 455911 11.82 517015 77 57664 429612 11.83 487276 78 53483 383403 12.24 436886 79 47711 279377 14.59 327088 80 26452 85226 23.69 111678 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 77954 50733 60.58 128687 2 70103 34865 66.79 104968 3 76476 30845 71.26 107321 4 57678 28472 66.95 86150 5 55543 26136 68.00 81679 6 54383 23945 69.43 78328 7 61445 25474 70.69 86919 8 54961 22731 70.74 77692 9 53286 21856 70.91 75142 10 54051 22028 71.05 76079 11 53952 22375 70.69 76327 12 51219 21126 70.80 72345 13 50587 19887 71.78 70474 14 50262 19935 71.60 70197 15 50223 19141 72.40 69364 16 48827 18414 72.61 67241 17 48043 18104 72.63 66147 18 45160 16780 72.91 61940 19 44761 16648 72.89 61409 20 43951 16255 73.00 60206 21 42896 15407 73.57 58303 22 41052 15183 73.00 56235 23 40392 14697 73.32 55089 24 39489 14018 73.80 53507 25 39466 14127 73.64 53593 26 37981 13684 73.51 51665 27 36054 13004 73.49 49058 28 36793 12820 74.16 49613 29 35032 12211 74.15 47243 30 33646 11473 74.57 45119 31 34256 11624 74.66 45880 32 33212 11110 74.93 44322 33 31997 10957 74.49 42954 34 33045 11080 74.89 44125 35 31418 10571 74.82 41989 36 29574 9682 75.34 39256 37 29757 9756 75.31 39513 38 29154 9407 75.60 38561 39 28468 9046 75.89 37514 40 28669 9031 76.05 37700 41 26995 8778 75.46 35773 42 25353 8317 75.30 33670 43 25246 8006 75.92 33252 44 24854 8033 75.57 32887 45 23931 7628 75.83 31559 46 23673 7452 76.06 31125 47 23583 7427 76.05 31010 48 22147 6840 76.40 28987 49 21614 6909 75.78 28523 50 20815 6644 75.80 27459 51 19992 6334 75.94 26326 52 19981 6238 76.21 26219 53 19014 6189 75.44 25203 54 18864 6034 75.77 24898 55 18678 5930 75.90 24608 56 17912 5830 75.44 23742 57 18082 5831 75.62 23913 58 16851 5470 75.49 22321 59 16111 5317 75.19 21428 60 15681 5079 75.53 20760 61 15301 5056 75.16 20357 62 14974 4893 75.37 19867 63 14544 4569 76.09 19113 64 13971 4606 75.21 18577 65 13733 4415 75.67 18148 66 13070 4366 74.96 17436 67 12821 4223 75.22 17044 68 12413 4134 75.02 16547 69 12015 3934 75.33 15949 70 11751 3957 74.81 15708 71 11511 3858 74.90 15369 72 11032 3759 74.59 14791 73 10774 3758 74.14 14532 74 10424 3642 74.11 14066 75 9858 3364 74.56 13222 76 9322 3384 73.37 12706 77 9031 3238 73.61 12269 78 8581 3224 72.69 11805 79 7744 2959 72.35 10703 80 5562 2256 71.14 7818 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 15745 212282 6.90 228027 2 12355 174104 6.63 186459 3 16213 164822 8.96 181035 4 8472 155943 5.15 164415 5 8334 130523 6.00 138857 6 7900 128227 5.80 136127 7 8302 125916 6.19 134218 8 8960 139141 6.05 148101 9 7409 117341 5.94 124750 10 7339 113936 6.05 121275 11 7231 115137 5.91 122368 12 7178 118029 5.73 125207 13 6659 111252 5.65 117911 14 6926 107203 6.07 114129 15 6837 109444 5.88 116281 16 6247 102965 5.72 109212 17 5994 98762 5.72 104756 18 6114 98861 5.82 104975 19 5873 92585 5.96 98458 20 5794 90656 6.01 96450 21 5268 90636 5.49 95904 22 5267 85218 5.82 90485 23 5325 86937 5.77 92262 24 5099 84483 5.69 89582 25 5281 79659 6.22 84940 26 5299 77271 6.42 82570 27 5203 78822 6.19 84025 28 5004 75031 6.25 80035 29 4627 76064 5.73 80691 30 4389 71722 5.77 76111 31 4400 71461 5.80 75861 32 3989 69162 5.45 73151 33 4198 69156 5.72 73354 34 3955 64254 5.80 68209 35 3829 64191 5.63 68020 36 3718 62682 5.60 66400 37 3692 58568 5.93 62260 38 3945 58474 6.32 62419 39 3704 59346 5.87 63050 40 3603 55805 6.06 59408 41 3523 55038 6.02 58561 42 3201 54614 5.54 57815 43 2948 51950 5.37 54898 44 3005 49435 5.73 52440 45 2842 50047 5.37 52889 46 2825 47382 5.63 50207 47 2716 46918 5.47 49634 48 2669 45611 5.53 48280 49 2572 43124 5.63 45696 50 2514 41949 5.65 44463 51 2594 41957 5.82 44551 52 2466 39896 5.82 42362 53 2348 38596 5.73 40944 54 2373 38072 5.87 40445 55 2074 37031 5.30 39105 56 1971 36002 5.19 37973 57 2101 36559 5.43 38660 58 1965 34198 5.43 36163 59 1886 33312 5.36 35198 60 1891 33007 5.42 34898 61 1836 30919 5.61 32755 62 1814 30713 5.58 32527 63 1677 29937 5.30 31614 64 1842 28291 6.11 30133 65 1784 27821 6.03 29605 66 1717 27554 5.87 29271 67 1629 26785 5.73 28414 68 1611 25443 5.95 27054 69 1544 24666 5.89 26210 70 1402 24116 5.49 25518 71 1505 23477 6.02 24982 72 1419 22966 5.82 24385 73 1393 21990 5.96 23383 74 1308 21128 5.83 22436 75 1296 21090 5.79 22386 76 1268 19817 6.01 21085 77 1276 19208 6.23 20484 78 1113 18896 5.56 20009 79 919 17073 5.11 17992 80 595 12512 4.54 13107 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 69376 709294 8.91 778670 2 51657 532409 8.84 584066 3 52169 500229 9.44 552398 4 43130 461074 8.55 504204 5 41392 416183 9.05 457575 6 39686 377619 9.51 417305 7 38682 367798 9.52 406480 8 38350 360503 9.62 398853 9 39393 366616 9.70 406009 10 38851 361812 9.70 400663 11 38041 335253 10.19 373294 12 37192 330020 10.13 367212 13 36066 331592 9.81 367658 14 35914 323282 10.00 359196 15 35506 322271 9.92 357777 16 34772 318869 9.83 353641 17 33721 308600 9.85 342321 18 32906 303468 9.78 336374 19 32367 294012 9.92 326379 20 31025 282847 9.88 313872 21 30687 277843 9.95 308530 22 29568 267557 9.95 297125 23 29349 264007 10.00 293356 24 28511 254665 10.07 283176 25 28063 252044 10.02 280107 26 27203 244459 10.01 271662 27 27147 238854 10.21 266001 28 26067 235735 9.96 261802 29 26141 227920 10.29 254061 30 25568 222161 10.32 247729 31 25487 228042 10.05 253529 32 24252 211022 10.31 235274 33 23642 205693 10.31 229335 34 23232 204749 10.19 227981 35 22392 199629 10.09 222021 36 21609 194691 9.99 216300 37 20909 191877 9.83 212786 38 20244 185446 9.84 205690 39 19896 180911 9.91 200807 40 19862 180396 9.92 200258 41 19104 175820 9.80 194924 42 18589 167789 9.97 186378 43 18436 165650 10.01 184086 44 17697 158270 10.06 175967 45 17039 153537 9.99 170576 46 16803 153715 9.85 170518 47 16158 148784 9.80 164942 48 15830 149077 9.60 164907 49 15068 146508 9.33 161576 50 14614 135341 9.75 149955 51 14223 131142 9.78 145365 52 14025 133265 9.52 147290 53 13399 122985 9.82 136384 54 13478 119188 10.16 132666 55 12977 117255 9.96 130232 56 12652 114873 9.92 127525 57 12605 114092 9.95 126697 58 11835 107857 9.89 119692 59 11613 108959 9.63 120572 60 11291 103266 9.86 114557 61 11166 99486 10.09 110652 62 10461 96285 9.80 106746 63 10153 95256 9.63 105409 64 9837 95798 9.31 105635 65 9529 89592 9.61 99121 66 9180 85558 9.69 94738 67 8949 86148 9.41 95097 68 8601 87668 8.93 96269 69 8452 84027 9.14 92479 70 8370 79139 9.56 87509 71 8142 76826 9.58 84968 72 7983 76816 9.41 84799 73 7619 71410 9.64 79029 74 7271 68774 9.56 76045 75 7100 66355 9.67 73455 76 6646 65015 9.27 71661 77 6325 62778 9.15 69103 78 5727 61434 8.53 67161 79 4611 57197 7.46 61808 80 2712 40928 6.21 43640