CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 138343 64936 68.06 203279 2 147717 67328 68.69 215045 3 130812 65050 66.79 195862 4 124685 59078 67.85 183763 5 127248 59423 68.17 186671 6 129495 59888 68.38 189383 7 126098 59172 68.06 185270 8 128463 59823 68.23 188286 9 130667 58462 69.09 189129 10 134723 59510 69.36 194233 11 136579 60031 69.47 196610 12 137501 59252 69.89 196753 13 138368 59061 70.08 197429 14 139255 60237 69.80 199492 15 138770 59601 69.95 198371 16 140008 59141 70.30 199149 17 140713 59955 70.12 200668 18 142579 60213 70.31 202792 19 141340 59719 70.30 201059 20 143792 59411 70.76 203203 21 143601 59790 70.60 203391 22 144113 61209 70.19 205322 23 142991 60631 70.22 203622 24 144468 60649 70.43 205117 25 144171 60457 70.46 204628 26 143791 60861 70.26 204652 27 146965 60923 70.69 207888 28 146300 60814 70.64 207114 29 145416 60851 70.50 206267 30 147875 61231 70.72 209106 31 145690 60091 70.80 205781 32 147426 61584 70.54 209010 33 149047 60994 70.96 210041 34 145905 60486 70.69 206391 35 145510 61496 70.29 207006 36 145844 60664 70.62 206508 37 143782 59812 70.62 203594 38 145088 60446 70.59 205534 39 144710 60358 70.57 205068 40 142887 59242 70.69 202129 41 140758 59440 70.31 200198 42 141481 59483 70.40 200964 43 139860 58576 70.48 198436 44 138269 58992 70.09 197261 45 138590 58605 70.28 197195 46 136734 58399 70.07 195133 47 135135 58183 69.90 193318 48 134103 57992 69.81 192095 49 132033 56692 69.96 188725 50 129762 56597 69.63 186359 51 128518 56253 69.56 184771 52 126569 54626 69.85 181195 53 125704 54518 69.75 180222 54 125407 53812 69.97 179219 55 123342 53906 69.59 177248 56 121827 53349 69.55 175176 57 120209 52863 69.46 173072 58 117944 52297 69.28 170241 59 115870 51393 69.27 167263 60 115112 50290 69.60 165402 61 112382 49782 69.30 162164 62 110632 49480 69.10 160112 63 108887 48594 69.14 157481 64 106626 48029 68.94 154655 65 104627 47326 68.85 151953 66 103812 46743 68.95 150555 67 102918 45850 69.18 148768 68 100199 45374 68.83 145573 69 99404 44133 69.25 143537 70 97766 43950 68.99 141716 71 94645 42918 68.80 137563 72 92573 42581 68.49 135154 73 90779 42027 68.35 132806 74 88805 41871 67.96 130676 75 86421 41144 67.75 127565 76 82940 40042 67.44 122982 77 78584 37690 67.59 116274 78 70175 33424 67.74 103599 79 51238 25162 67.07 76400 80 17027 7699 68.86 24726 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 61985 273164 18.49 335149 2 43471 270968 13.82 314439 3 39326 263253 13.00 302579 4 35401 264607 11.80 300008 5 38314 265594 12.61 303908 6 37524 264033 12.44 301557 7 32397 273986 10.57 306383 8 32431 270769 10.70 303200 9 34624 272576 11.27 307200 10 32177 279186 10.33 311363 11 30187 276358 9.85 306545 12 29289 279072 9.50 308361 13 32728 284609 10.31 317337 14 29495 284609 9.39 314104 15 28759 285616 9.15 314375 16 29462 293413 9.12 322875 17 28082 294509 8.71 322591 18 28320 294151 8.78 322471 19 29149 299095 8.88 328244 20 27166 297780 8.36 324946 21 31759 301157 9.54 332916 22 28940 302544 8.73 331484 23 26935 300796 8.22 327731 24 26956 304256 8.14 331212 25 27175 309871 8.06 337046 26 26331 309002 7.85 335333 27 28026 309744 8.30 337770 28 25746 313145 7.60 338891 29 27808 311967 8.18 339775 30 26606 309775 7.91 336381 31 27201 314037 7.97 341238 32 25186 312887 7.45 338073 33 26771 311484 7.91 338255 34 26852 314286 7.87 341138 35 24646 312503 7.31 337149 36 25606 312233 7.58 337839 37 25785 314340 7.58 340125 38 23943 311290 7.14 335233 39 23416 311251 7.00 334667 40 24020 310721 7.18 334741 41 23577 308001 7.11 331578 42 23086 305567 7.02 328653 43 23763 306697 7.19 330460 44 22677 302329 6.98 325006 45 24069 300367 7.42 324436 46 22786 299943 7.06 322729 47 23486 295527 7.36 319013 48 22251 292602 7.07 314853 49 22602 291391 7.20 313993 50 21458 287556 6.94 309014 51 20646 281192 6.84 301838 52 20028 283335 6.60 303363 53 20736 279093 6.92 299829 54 20132 276700 6.78 296832 55 20193 274779 6.85 294972 56 19084 269650 6.61 288734 57 18763 265736 6.60 284499 58 18636 264649 6.58 283285 59 17911 257812 6.50 275723 60 18203 255492 6.65 273695 61 18442 252458 6.81 270900 62 17506 245976 6.64 263482 63 17316 243611 6.64 260927 64 16383 240386 6.38 256769 65 15901 236830 6.29 252731 66 15592 233226 6.27 248818 67 15037 229693 6.14 244730 68 15037 223711 6.30 238748 69 14913 221529 6.31 236442 70 14066 218083 6.06 232149 71 14011 212603 6.18 226614 72 13478 208520 6.07 221998 73 14363 207380 6.48 221743 74 13935 202688 6.43 216623 75 13938 198463 6.56 212401 76 13853 193825 6.67 207678 77 13119 182619 6.70 195738 78 12852 161947 7.35 174799 79 10983 115957 8.65 126940 80 5538 34359 13.88 39897 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 314256 990931 24.08 1305187 2 290332 997234 22.55 1287566 3 271520 973611 21.81 1245131 4 262494 961860 21.44 1224354 5 258855 965231 21.15 1224086 6 261262 953603 21.51 1214865 7 252106 943759 21.08 1195865 8 243331 941907 20.53 1185238 9 258454 947832 21.43 1206286 10 258446 953501 21.32 1211947 11 258304 970897 21.01 1229201 12 265878 983320 21.28 1249198 13 272081 981460 21.70 1253541 14 252357 999696 20.16 1252053 15 261690 1007210 20.62 1268900 16 271818 1008564 21.23 1280382 17 253619 1015241 19.99 1268860 18 257996 1027076 20.08 1285072 19 262954 1026821 20.39 1289775 20 254035 1042051 19.60 1296086 21 254568 1044174 19.60 1298742 22 254359 1035520 19.72 1289879 23 243116 1035255 19.02 1278371 24 251034 1048292 19.32 1299326 25 251548 1050615 19.32 1302163 26 244381 1054791 18.81 1299172 27 253746 1060616 19.31 1314362 28 253530 1055124 19.37 1308654 29 243837 1058605 18.72 1302442 30 243540 1066161 18.60 1309701 31 241263 1057742 18.57 1299005 32 230004 1063451 17.78 1293455 33 233304 1059048 18.05 1292352 34 230391 1056413 17.90 1286804 35 227346 1058525 17.68 1285871 36 228127 1058533 17.73 1286660 37 226961 1051102 17.76 1278063 38 221876 1047460 17.48 1269336 39 214124 1043095 17.03 1257219 40 213035 1036592 17.05 1249627 41 206965 1028738 16.75 1235703 42 203384 1026370 16.54 1229754 43 204665 1011754 16.83 1216419 44 193674 1004719 16.16 1198393 45 192447 994566 16.21 1187013 46 185036 980737 15.87 1165773 47 179083 967975 15.61 1147058 48 177608 958969 15.63 1136577 49 175916 945350 15.69 1121266 50 167041 935674 15.15 1102715 51 164074 921220 15.12 1085294 52 161510 914225 15.01 1075735 53 161514 901635 15.19 1063149 54 151288 890037 14.53 1041325 55 149453 876393 14.57 1025846 56 140593 862187 14.02 1002780 57 138194 849798 13.99 987992 58 134659 833339 13.91 967998 59 126145 817436 13.37 943581 60 126156 807469 13.51 933625 61 124547 791658 13.59 916205 62 112343 779608 12.60 891951 63 110811 769866 12.58 880677 64 107572 756476 12.45 864048 65 101173 742251 12.00 843424 66 98891 729059 11.94 827950 67 97354 717637 11.95 814991 68 94959 706239 11.85 801198 69 93968 695422 11.90 789390 70 88831 681702 11.53 770533 71 86170 665010 11.47 751180 72 83794 657188 11.31 740982 73 83639 644675 11.48 728314 74 78478 634505 11.01 712983 75 78472 620366 11.23 698838 76 76485 602179 11.27 678664 77 72960 568723 11.37 641683 78 67994 507071 11.82 575065 79 59980 368999 13.98 428979 80 33017 111395 22.86 144412 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 85983 70813 54.84 156796 2 77409 50834 60.36 128243 3 78651 45877 63.16 124528 4 67567 41886 61.73 109453 5 65372 39809 62.15 105181 6 64249 36955 63.48 101204 7 69735 41979 62.42 111714 8 63711 34344 64.97 98055 9 61661 32818 65.26 94479 10 62734 32800 65.67 95534 11 62718 33569 65.14 96287 12 59666 31563 65.40 91229 13 59336 30255 66.23 89591 14 59161 30133 66.25 89294 15 59187 29261 66.92 88448 16 57183 28259 66.93 85442 17 55807 28568 66.14 84375 18 52792 26164 66.86 78956 19 52758 25794 67.16 78552 20 51907 25315 67.22 77222 21 50124 24825 66.88 74949 22 49242 23906 67.32 73148 23 48469 23130 67.70 71599 24 47646 22363 68.06 70009 25 47371 22739 67.57 70110 26 46091 22393 67.30 68484 27 43067 20948 67.28 64015 28 43874 20722 67.92 64596 29 42228 20161 67.69 62389 30 40781 19030 68.18 59811 31 41559 19196 68.40 60755 32 40476 18369 68.78 58845 33 38547 17749 68.47 56296 34 39793 18004 68.85 57797 35 38062 17197 68.88 55259 36 36343 16283 69.06 52626 37 36200 16104 69.21 52304 38 35539 15985 68.98 51524 39 34380 15343 69.14 49723 40 34913 15538 69.20 50451 41 32571 14357 69.41 46928 42 31043 13570 69.58 44613 43 30597 13727 69.03 44324 44 30503 13239 69.73 43742 45 29054 12686 69.61 41740 46 28547 12807 69.03 41354 47 28431 12798 68.96 41229 48 27165 11829 69.66 38994 49 26233 11815 68.95 38048 50 25338 11293 69.17 36631 51 24291 10802 69.22 35093 52 23800 10702 68.98 34502 53 23471 10458 69.18 33929 54 22703 10032 69.35 32735 55 22460 10224 68.72 32684 56 21935 9972 68.75 31907 57 22055 9934 68.95 31989 58 20568 9334 68.78 29902 59 19685 9222 68.10 28907 60 19053 8685 68.69 27738 61 18964 8441 69.20 27405 62 18154 8360 68.47 26514 63 17572 8274 67.99 25846 64 17230 8140 67.91 25370 65 16558 7787 68.01 24345 66 15894 7337 68.42 23231 67 15322 7279 67.79 22601 68 15014 7068 67.99 22082 69 14484 6731 68.27 21215 70 14388 6749 68.07 21137 71 14193 6946 67.14 21139 72 13555 6598 67.26 20153 73 12979 6701 65.95 19680 74 12739 6224 67.18 18963 75 11915 5881 66.95 17796 76 11380 5759 66.40 17139 77 11050 5833 65.45 16883 78 10686 5643 65.44 16329 79 9388 5220 64.27 14608 80 6706 3946 62.96 10652 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18262 262236 6.51 280498 2 14362 223853 6.03 238215 3 14186 206956 6.41 221142 4 10569 186598 5.36 197167 5 10319 171940 5.66 182259 6 10139 167500 5.71 177639 7 9864 160877 5.78 170741 8 10406 170872 5.74 181278 9 9255 151716 5.75 160971 10 9244 147910 5.88 157154 11 9256 145817 5.97 155073 12 9104 146735 5.84 155839 13 8759 137565 5.99 146324 14 8667 134806 6.04 143473 15 8733 139729 5.88 148462 16 7942 132253 5.66 140195 17 7922 125737 5.93 133659 18 7846 128502 5.75 136348 19 7340 121747 5.69 129087 20 7422 119364 5.85 126786 21 7184 119188 5.68 126372 22 6940 112661 5.80 119601 23 6996 114582 5.75 121578 24 6647 111994 5.60 118641 25 6841 105622 6.08 112463 26 6893 103043 6.27 109936 27 6891 105581 6.13 112472 28 6489 99511 6.12 106000 29 6104 102218 5.64 108322 30 5543 95863 5.47 101406 31 5620 95218 5.57 100838 32 5443 93306 5.51 98749 33 5565 93717 5.61 99282 34 5224 85961 5.73 91185 35 5293 85844 5.81 91137 36 4997 83692 5.63 88689 37 4986 78894 5.94 83880 38 5076 78157 6.10 83233 39 4868 79030 5.80 83898 40 4653 75466 5.81 80119 41 4661 73990 5.93 78651 42 4093 73266 5.29 77359 43 3948 69836 5.35 73784 44 3923 67364 5.50 71287 45 3892 67428 5.46 71320 46 3758 64053 5.54 67811 47 3615 64088 5.34 67703 48 3570 60779 5.55 64349 49 3399 58449 5.50 61848 50 3358 57081 5.56 60439 51 3439 57354 5.66 60793 52 3295 54107 5.74 57402 53 3209 52450 5.77 55659 54 3236 51751 5.89 54987 55 2853 50189 5.38 53042 56 2718 49162 5.24 51880 57 2941 49907 5.57 52848 58 2799 46035 5.73 48834 59 2580 44989 5.42 47569 60 2466 44822 5.21 47288 61 2436 41948 5.49 44384 62 2354 41427 5.38 43781 63 2274 40783 5.28 43057 64 2446 39171 5.88 41617 65 2308 38092 5.71 40400 66 2280 37554 5.72 39834 67 2161 35720 5.70 37881 68 2167 35064 5.82 37231 69 2147 33520 6.02 35667 70 2066 32686 5.94 34752 71 2057 31737 6.09 33794 72 2009 31395 6.01 33404 73 1810 29812 5.72 31622 74 1774 29133 5.74 30907 75 1851 29013 6.00 30864 76 1674 26979 5.84 28653 77 1716 26143 6.16 27859 78 1558 25846 5.69 27404 79 1346 23337 5.45 24683 80 813 17265 4.50 18078 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 79221 893231 8.15 972452 2 59759 697706 7.89 757465 3 60334 663033 8.34 723367 4 53815 610843 8.10 664658 5 52092 559598 8.52 611690 6 49505 508341 8.87 557846 7 48732 497575 8.92 546307 8 48181 484148 9.05 532329 9 48780 489584 9.06 538364 10 47536 487104 8.89 534640 11 46653 444977 9.49 491630 12 45737 437840 9.46 483577 13 45317 435546 9.42 480863 14 44723 423993 9.54 468716 15 44847 423539 9.57 468386 16 44107 421063 9.48 465170 17 42975 408428 9.52 451403 18 42803 407183 9.51 449986 19 41529 399460 9.42 440989 20 40876 384919 9.60 425795 21 39951 380316 9.51 420267 22 38934 365802 9.62 404736 23 38703 362425 9.65 401128 24 37378 351527 9.61 388905 25 36741 348117 9.55 384858 26 35169 337290 9.44 372459 27 35830 329761 9.80 365591 28 34643 326328 9.60 360971 29 34313 316405 9.78 350718 30 33600 306688 9.87 340288 31 33549 316107 9.59 349656 32 31702 293622 9.74 325324 33 31402 286208 9.89 317610 34 30195 284985 9.58 315180 35 29385 279081 9.53 308466 36 28854 271714 9.60 300568 37 27896 268554 9.41 296450 38 26841 259643 9.37 286484 39 26588 254868 9.45 281456 40 26143 252812 9.37 278955 41 25091 247959 9.19 273050 42 24409 235608 9.39 260017 43 24255 233524 9.41 257779 44 23262 222444 9.47 245706 45 22732 215550 9.54 238282 46 22260 217229 9.29 239489 47 21556 210380 9.29 231936 48 21103 211520 9.07 232623 49 20232 208554 8.84 228786 50 19564 191845 9.25 211409 51 19030 186490 9.26 205520 52 18668 190667 8.92 209335 53 17921 174202 9.33 192123 54 17682 167121 9.57 184803 55 17355 166261 9.45 183616 56 16805 162054 9.40 178859 57 16724 162390 9.34 179114 58 15868 153459 9.37 169327 59 15657 154951 9.18 170608 60 15242 146385 9.43 161627 61 14853 141193 9.52 156046 62 14189 137260 9.37 151449 63 13795 135237 9.26 149032 64 13245 136959 8.82 150204 65 12571 128298 8.92 140869 66 12578 123713 9.23 136291 67 12173 122338 9.05 134511 68 11873 124739 8.69 136612 69 11528 120147 8.75 131675 70 11130 112608 8.99 123738 71 11123 110448 9.15 121571 72 10806 109563 8.98 120369 73 10272 102815 9.08 113087 74 9715 97774 9.04 107489 75 9704 94820 9.28 104524 76 9100 92631 8.95 101731 77 8495 89399 8.68 97894 78 7957 88199 8.28 96156 79 6561 81747 7.43 88308 80 4081 58621 6.51 62702