zr2096_4_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8816068 lines in total Total number of methylation call strings processed: 17632136 Final Cytosine Methylation Report ================================= Total number of C's analysed: 126313155 Total methylated C's in CpG context: 9972224 Total methylated C's in CHG context: 1848398 Total methylated C's in CHH context: 14890081 Total C to T conversions in CpG context: 4727011 Total C to T conversions in CHG context: 22432587 Total C to T conversions in CHH context: 72442854 C methylated in CpG context: 67.8% C methylated in CHG context: 7.6% C methylated in CHH context: 17.0%