CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 125707 56710 68.91 182417 2 139159 57987 70.59 197146 3 108973 57170 65.59 166143 4 103760 52548 66.38 156308 5 106901 53630 66.59 160531 6 107443 53146 66.91 160589 7 103462 54160 65.64 157622 8 106955 52911 66.90 159866 9 109183 52326 67.60 161509 10 112750 53235 67.93 165985 11 115257 53205 68.42 168462 12 116397 52299 69.00 168696 13 115363 52174 68.86 167537 14 115099 53041 68.45 168140 15 115694 51999 68.99 167693 16 115991 52047 69.03 168038 17 115183 52685 68.62 167868 18 118373 53128 69.02 171501 19 116138 51631 69.22 167769 20 118022 52289 69.30 170311 21 118357 52246 69.38 170603 22 118155 53159 68.97 171314 23 116877 52510 69.00 169387 24 118507 52921 69.13 171428 25 117706 52526 69.14 170232 26 117650 53150 68.88 170800 27 119880 52945 69.36 172825 28 118709 52384 69.38 171093 29 118378 52428 69.31 170806 30 120071 52121 69.73 172192 31 117292 51763 69.38 169055 32 118205 52477 69.25 170682 33 119246 52592 69.39 171838 34 116819 51890 69.24 168709 35 116718 52014 69.17 168732 36 116758 51731 69.30 168489 37 115141 50981 69.31 166122 38 114257 51017 69.13 165274 39 115622 50590 69.56 166212 40 113678 49579 69.63 163257 41 111420 49258 69.34 160678 42 111776 50378 68.93 162154 43 109706 48334 69.42 158040 44 108443 49254 68.77 157697 45 107502 48483 68.92 155985 46 106161 48205 68.77 154366 47 105486 48025 68.72 153511 48 104315 47493 68.72 151808 49 101762 46406 68.68 148168 50 99519 46428 68.19 145947 51 98809 45583 68.43 144392 52 97193 44261 68.71 141454 53 95651 43866 68.56 139517 54 95366 43848 68.50 139214 55 93985 43415 68.40 137400 56 92248 42696 68.36 134944 57 90794 42146 68.30 132940 58 88743 41760 68.00 130503 59 86745 40824 68.00 127569 60 86954 40127 68.42 127081 61 84198 39776 67.92 123974 62 82673 39011 67.94 121684 63 81098 38111 68.03 119209 64 79054 37429 67.87 116483 65 77600 36806 67.83 114406 66 76379 36734 67.52 113113 67 74209 35483 67.65 109692 68 73088 34776 67.76 107864 69 72290 34462 67.72 106752 70 70973 33720 67.79 104693 71 68586 33008 67.51 101594 72 67513 32547 67.47 100060 73 65379 31837 67.25 97216 74 63646 31745 66.72 95391 75 61306 31189 66.28 92495 76 58956 29710 66.49 88666 77 56026 28613 66.19 84639 78 49633 25201 66.32 74834 79 36265 18436 66.30 54701 80 12164 5621 68.39 17785 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 62746 229959 21.44 292705 2 35343 230353 13.30 265696 3 30172 224160 11.86 254332 4 28047 227070 10.99 255117 5 31089 228859 11.96 259948 6 32460 226495 12.53 258955 7 25339 235810 9.70 261149 8 25658 230722 10.01 256380 9 27224 232891 10.47 260115 10 25186 240372 9.48 265558 11 24072 236305 9.25 260377 12 23229 238178 8.89 261407 13 25348 242319 9.47 267667 14 22966 241666 8.68 264632 15 22654 242197 8.55 264851 16 22770 248956 8.38 271726 17 22059 250016 8.11 272075 18 22203 250440 8.14 272643 19 22702 254010 8.20 276712 20 21278 252800 7.76 274078 21 25260 255151 9.01 280411 22 22896 257385 8.17 280281 23 21127 253614 7.69 274741 24 21476 255328 7.76 276804 25 21679 260192 7.69 281871 26 21252 258247 7.60 279499 27 22063 259744 7.83 281807 28 20948 261182 7.42 282130 29 22013 260080 7.80 282093 30 21418 257492 7.68 278910 31 22397 260307 7.92 282704 32 20468 258098 7.35 278566 33 21895 256536 7.86 278431 34 21999 257505 7.87 279504 35 20234 256481 7.31 276715 36 21163 254579 7.67 275742 37 21085 256479 7.60 277564 38 19365 252223 7.13 271588 39 18998 251451 7.02 270449 40 19092 251507 7.06 270599 41 19445 248993 7.24 268438 42 18791 245025 7.12 263816 43 19279 244456 7.31 263735 44 18203 242676 6.98 260879 45 19315 239581 7.46 258896 46 18369 239167 7.13 257536 47 18771 234576 7.41 253347 48 17642 231536 7.08 249178 49 17985 231059 7.22 249044 50 16904 225895 6.96 242799 51 16607 222710 6.94 239317 52 15903 222250 6.68 238153 53 16090 218074 6.87 234164 54 16148 215703 6.96 231851 55 15970 213524 6.96 229494 56 14838 208122 6.66 222960 57 14766 205182 6.71 219948 58 14732 203230 6.76 217962 59 13932 198442 6.56 212374 60 13911 194894 6.66 208805 61 13947 193702 6.72 207649 62 13352 188029 6.63 201381 63 13302 185667 6.69 198969 64 12495 182689 6.40 195184 65 12135 179065 6.35 191200 66 11685 175565 6.24 187250 67 11440 172908 6.21 184348 68 11076 168747 6.16 179823 69 11279 165521 6.38 176800 70 10634 162710 6.13 173344 71 10604 159550 6.23 170154 72 10176 155605 6.14 165781 73 10540 153123 6.44 163663 74 10206 150592 6.35 160798 75 10329 146356 6.59 156685 76 10135 142713 6.63 152848 77 9518 134033 6.63 143551 78 9535 118167 7.47 127702 79 8194 83797 8.91 91991 80 4331 24793 14.87 29124 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 274713 788764 25.83 1063477 2 254004 804342 24.00 1058346 3 230995 789209 22.64 1020204 4 224557 786558 22.21 1011115 5 228070 799825 22.19 1027895 6 236222 780441 23.24 1016663 7 219774 770595 22.19 990369 8 215324 765313 21.96 980637 9 229975 769775 23.00 999750 10 230732 780733 22.81 1011465 11 229336 799855 22.28 1029191 12 234590 811518 22.43 1046108 13 241580 813071 22.91 1054651 14 225748 829325 21.40 1055073 15 233135 840016 21.72 1073151 16 241117 842370 22.25 1083487 17 226953 849382 21.09 1076335 18 231141 862619 21.13 1093760 19 235862 860927 21.50 1096789 20 229620 871273 20.86 1100893 21 230955 872158 20.94 1103113 22 230002 864212 21.02 1094214 23 219229 861680 20.28 1080909 24 225834 869838 20.61 1095672 25 228379 871543 20.76 1099922 26 220393 874961 20.12 1095354 27 228236 877414 20.64 1105650 28 228135 872745 20.72 1100880 29 219410 871168 20.12 1090578 30 219441 876155 20.03 1095596 31 217672 866311 20.08 1083983 32 206793 866796 19.26 1073589 33 209083 860465 19.55 1069548 34 207283 853336 19.54 1060619 35 201146 856864 19.01 1058010 36 201746 853838 19.11 1055584 37 200040 843735 19.17 1043775 38 195325 839623 18.87 1034948 39 189046 834107 18.48 1023153 40 188068 822869 18.60 1010937 41 181987 817391 18.21 999378 42 178501 811681 18.03 990182 43 177871 796626 18.25 974497 44 167953 788366 17.56 956319 45 166573 776999 17.65 943572 46 161179 763973 17.42 925152 47 154557 751478 17.06 906035 48 151830 746836 16.90 898666 49 150544 729974 17.10 880518 50 141440 719715 16.42 861155 51 138346 706052 16.38 844398 52 136198 698629 16.31 834827 53 134510 687818 16.36 822328 54 126832 676610 15.79 803442 55 124190 661426 15.81 785616 56 116138 650159 15.16 766297 57 114168 639536 15.15 753704 58 110703 627201 15.00 737904 59 103686 613247 14.46 716933 60 102641 603303 14.54 705944 61 100407 588954 14.57 689361 62 91108 577881 13.62 668989 63 89411 568227 13.60 657638 64 86943 554896 13.55 641839 65 81080 543910 12.97 624990 66 79090 534223 12.90 613313 67 77418 523491 12.88 600909 68 74532 514004 12.66 588536 69 73521 504083 12.73 577604 70 70225 493459 12.46 563684 71 67275 480924 12.27 548199 72 65239 474491 12.09 539730 73 65073 464244 12.29 529317 74 60419 454891 11.72 515310 75 60299 444672 11.94 504971 76 59510 428521 12.19 488031 77 55647 404694 12.09 460341 78 51902 359205 12.62 411107 79 45625 259675 14.94 305300 80 25321 79162 24.23 104483 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 67812 55413 55.03 123225 2 61445 38184 61.67 99629 3 69766 34448 66.94 104214 4 48001 31790 60.16 79791 5 46744 28257 62.32 75001 6 45818 26772 63.12 72590 7 49441 30021 62.22 79462 8 45504 25988 63.65 71492 9 45164 24969 64.40 70133 10 45855 25749 64.04 71604 11 44995 25944 63.43 70939 12 42857 24363 63.76 67220 13 42665 23181 64.80 65846 14 42312 22789 64.99 65101 15 42016 22037 65.60 64053 16 41123 21228 65.95 62351 17 39548 21085 65.23 60633 18 37635 19575 65.78 57210 19 37175 18889 66.31 56064 20 35942 18513 66.00 54455 21 35211 18052 66.11 53263 22 34373 17402 66.39 51775 23 33723 16861 66.67 50584 24 32617 16230 66.77 48847 25 32638 16254 66.76 48892 26 31495 15905 66.45 47400 27 29864 14917 66.69 44781 28 30194 15021 66.78 45215 29 29395 14159 67.49 43554 30 28205 13648 67.39 41853 31 27969 13486 67.47 41455 32 27428 13092 67.69 40520 33 26500 12637 67.71 39137 34 27158 12638 68.24 39796 35 25924 12135 68.12 38059 36 25007 11410 68.67 36417 37 24593 11441 68.25 36034 38 23877 11384 67.72 35261 39 22917 10801 67.97 33718 40 23762 10952 68.45 34714 41 22184 10350 68.19 32534 42 20910 9836 68.01 30746 43 21061 9721 68.42 30782 44 20545 9413 68.58 29958 45 19718 9194 68.20 28912 46 19264 8827 68.58 28091 47 18901 8844 68.12 27745 48 18242 8289 68.76 26531 49 17771 8331 68.08 26102 50 16767 8140 67.32 24907 51 16448 7558 68.52 24006 52 16181 7627 67.96 23808 53 16099 7355 68.64 23454 54 15265 7243 67.82 22508 55 15060 7063 68.07 22123 56 14715 6952 67.91 21667 57 14644 6924 67.90 21568 58 13570 6541 67.48 20111 59 13378 6302 67.98 19680 60 12713 6163 67.35 18876 61 12757 6201 67.29 18958 62 12314 5814 67.93 18128 63 11440 5698 66.75 17138 64 11629 5621 67.41 17250 65 11069 5408 67.18 16477 66 10701 5209 67.26 15910 67 10564 5078 67.54 15642 68 10076 5066 66.54 15142 69 9651 4789 66.84 14440 70 9595 4823 66.55 14418 71 9506 4626 67.27 14132 72 8868 4635 65.67 13503 73 8741 4513 65.95 13254 74 8425 4282 66.30 12707 75 8130 4093 66.51 12223 76 7689 4125 65.08 11814 77 7438 4065 64.66 11503 78 7166 4033 63.99 11199 79 6343 3587 63.88 9930 80 4568 2702 62.83 7270 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 15707 204468 7.13 220175 2 12687 165884 7.10 178571 3 17952 157865 10.21 175817 4 8394 153332 5.19 161726 5 7703 123091 5.89 130794 6 7430 120907 5.79 128337 7 8050 119400 6.32 127450 8 8961 133497 6.29 142458 9 6952 111375 5.88 118327 10 6966 108642 6.03 115608 11 6905 110398 5.89 117303 12 6772 113775 5.62 120547 13 6392 107940 5.59 114332 14 6543 102922 5.98 109465 15 6397 104556 5.77 110953 16 5732 98687 5.49 104419 17 5740 94161 5.75 99901 18 5561 93444 5.62 99005 19 5398 87239 5.83 92637 20 5227 85809 5.74 91036 21 5066 85163 5.61 90229 22 4904 80463 5.74 85367 23 5057 81392 5.85 86449 24 4575 80722 5.36 85297 25 4789 74964 6.00 79753 26 4774 73169 6.12 77943 27 4673 74679 5.89 79352 28 4571 70770 6.07 75341 29 4246 71358 5.62 75604 30 3988 67896 5.55 71884 31 4058 66660 5.74 70718 32 3826 65094 5.55 68920 33 3787 65325 5.48 69112 34 3561 60447 5.56 64008 35 3583 60200 5.62 63783 36 3512 58277 5.68 61789 37 3451 55367 5.87 58818 38 3560 54563 6.12 58123 39 3370 55421 5.73 58791 40 3272 52799 5.84 56071 41 3243 52082 5.86 55325 42 2806 50983 5.22 53789 43 2759 48865 5.34 51624 44 2618 46531 5.33 49149 45 2667 47094 5.36 49761 46 2581 44577 5.47 47158 47 2542 44489 5.40 47031 48 2532 42670 5.60 45202 49 2391 41143 5.49 43534 50 2218 39728 5.29 41946 51 2299 39881 5.45 42180 52 2224 37656 5.58 39880 53 2145 36630 5.53 38775 54 2284 36100 5.95 38384 55 1886 35116 5.10 37002 56 1829 34103 5.09 35932 57 1942 34535 5.32 36477 58 1783 32121 5.26 33904 59 1750 31436 5.27 33186 60 1641 30990 5.03 32631 61 1696 29243 5.48 30939 62 1613 28658 5.33 30271 63 1588 28628 5.26 30216 64 1605 26982 5.61 28587 65 1539 25998 5.59 27537 66 1541 25877 5.62 27418 67 1462 24628 5.60 26090 68 1496 24170 5.83 25666 69 1400 23285 5.67 24685 70 1296 22600 5.42 23896 71 1365 22160 5.80 23525 72 1296 21703 5.64 22999 73 1292 20784 5.85 22076 74 1170 20062 5.51 21232 75 1182 19962 5.59 21144 76 1106 19015 5.50 20121 77 1161 18232 5.99 19393 78 1061 17874 5.60 18935 79 868 16227 5.08 17095 80 542 12062 4.30 12604 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 70645 678381 9.43 749026 2 53075 504557 9.52 557632 3 54999 470964 10.46 525963 4 43523 438420 9.03 481943 5 41579 390745 9.62 432324 6 39667 356137 10.02 395804 7 38897 346683 10.09 385580 8 38184 342044 10.04 380228 9 39659 347219 10.25 386878 10 38981 342913 10.21 381894 11 37412 317439 10.54 354851 12 36620 313914 10.45 350534 13 36209 317578 10.23 353787 14 35713 311050 10.30 346763 15 35283 309832 10.22 345115 16 34705 306282 10.18 340987 17 33386 297017 10.10 330403 18 32155 289440 10.00 321595 19 31244 279052 10.07 310296 20 30232 267121 10.17 297353 21 29930 262469 10.24 292399 22 29269 252042 10.40 281311 23 28388 248093 10.27 276481 24 27985 241827 10.37 269812 25 27419 238957 10.29 266376 26 26123 231746 10.13 257869 27 26096 226249 10.34 252345 28 25336 223182 10.19 248518 29 25040 215677 10.40 240717 30 24387 210705 10.37 235092 31 24245 214234 10.17 238479 32 23471 198726 10.56 222197 33 22866 194387 10.53 217253 34 22262 192759 10.35 215021 35 21737 188521 10.34 210258 36 21048 184733 10.23 205781 37 20317 181720 10.06 202037 38 19456 175013 10.00 194469 39 19399 171015 10.19 190414 40 18753 170657 9.90 189410 41 18456 166050 10.00 184506 42 18044 158401 10.23 176445 43 17637 156630 10.12 174267 44 16882 149823 10.13 166705 45 16547 144359 10.28 160906 46 16425 145119 10.17 161544 47 15488 140643 9.92 156131 48 15517 140657 9.94 156174 49 14547 139354 9.45 153901 50 13984 128476 9.82 142460 51 13946 124499 10.07 138445 52 13479 126755 9.61 140234 53 13166 115400 10.24 128566 54 13075 112666 10.40 125741 55 12732 111646 10.24 124378 56 12314 108203 10.22 120517 57 12222 108004 10.17 120226 58 11466 102342 10.07 113808 59 11398 102786 9.98 114184 60 10954 98192 10.04 109146 61 10729 93518 10.29 104247 62 10186 91597 10.01 101783 63 10043 89978 10.04 100021 64 9621 90637 9.60 100258 65 9265 84774 9.85 94039 66 9046 82054 9.93 91100 67 8862 81473 9.81 90335 68 8629 81936 9.53 90565 69 8427 79180 9.62 87607 70 8307 75101 9.96 83408 71 7922 73545 9.72 81467 72 7787 73152 9.62 80939 73 7609 68270 10.03 75879 74 7286 65562 10.00 72848 75 7074 63047 10.09 70121 76 6711 61435 9.85 68146 77 6228 59831 9.43 66059 78 5593 58180 8.77 63773 79 4474 54192 7.63 58666 80 2752 39531 6.51 42283