zr2096_3_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9850870 lines in total Total number of methylation call strings processed: 19701740 Final Cytosine Methylation Report ================================= Total number of C's analysed: 160911412 Total methylated C's in CpG context: 16847360 Total methylated C's in CHG context: 2616555 Total methylated C's in CHH context: 17387198 Total C to T conversions in CpG context: 4726865 Total C to T conversions in CHG context: 29584213 Total C to T conversions in CHH context: 89749221 C methylated in CpG context: 78.1% C methylated in CHG context: 8.1% C methylated in CHH context: 16.2%