CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 187118 58397 76.21 245515 2 208983 60022 77.69 269005 3 165652 58722 73.83 224374 4 159435 52255 75.32 211690 5 163453 53097 75.48 216550 6 164247 53759 75.34 218006 7 160257 53911 74.83 214168 8 164967 51467 76.22 216434 9 168019 50344 76.94 218363 10 174051 51016 77.33 225067 11 177101 51009 77.64 228110 12 177854 49975 78.06 227829 13 178723 49598 78.28 228321 14 177599 49593 78.17 227192 15 178437 49177 78.39 227614 16 178479 48915 78.49 227394 17 178810 49396 78.35 228206 18 182748 49762 78.60 232510 19 179352 48712 78.64 228064 20 184649 48662 79.14 233311 21 183954 48434 79.16 232388 22 182736 49891 78.55 232627 23 181952 48779 78.86 230731 24 184769 49170 78.98 233939 25 185010 48337 79.29 233347 26 184748 48605 79.17 233353 27 187921 48057 79.63 235978 28 186395 48293 79.42 234688 29 184978 48420 79.25 233398 30 188452 48686 79.47 237138 31 185813 47862 79.52 233675 32 186636 48432 79.40 235068 33 188705 48465 79.57 237170 34 185835 47380 79.68 233215 35 184856 47709 79.49 232565 36 185494 47597 79.58 233091 37 184280 46832 79.74 231112 38 184420 47133 79.64 231553 39 185257 46500 79.94 231757 40 182171 45954 79.86 228125 41 179619 45651 79.73 225270 42 180569 45973 79.71 226542 43 177167 44985 79.75 222152 44 176300 45623 79.44 221923 45 176725 45180 79.64 221905 46 174492 44271 79.76 218763 47 173043 44665 79.48 217708 48 171844 44351 79.49 216195 49 168816 43697 79.44 212513 50 166806 43596 79.28 210402 51 164484 43010 79.27 207494 52 161512 41988 79.37 203500 53 161252 41890 79.38 203142 54 159818 41675 79.32 201493 55 157588 41199 79.27 198787 56 156200 41173 79.14 197373 57 154214 40533 79.19 194747 58 150860 39934 79.07 190794 59 149329 39559 79.06 188888 60 147943 38962 79.15 186905 61 144692 39043 78.75 183735 62 142477 38331 78.80 180808 63 139534 38013 78.59 177547 64 137407 37165 78.71 174572 65 135209 36284 78.84 171493 66 134122 36245 78.73 170367 67 131338 35302 78.82 166640 68 129059 35075 78.63 164134 69 127838 34359 78.82 162197 70 125691 34525 78.45 160216 71 122171 33983 78.24 156154 72 120295 33784 78.07 154079 73 118109 32994 78.16 151103 74 115318 33088 77.70 148406 75 111959 32505 77.50 144464 76 108100 31626 77.37 139726 77 102233 30449 77.05 132682 78 91142 26977 77.16 118119 79 65974 19826 76.89 85800 80 21906 6225 77.87 28131 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 80660 281845 22.25 362505 2 45465 279072 14.01 324537 3 38951 272648 12.50 311599 4 36572 276026 11.70 312598 5 40755 277849 12.79 318604 6 42092 276177 13.23 318269 7 34200 287803 10.62 322003 8 33780 279603 10.78 313383 9 37184 285111 11.54 322295 10 33831 292168 10.38 325999 11 31570 287970 9.88 319540 12 30834 287834 9.68 318668 13 34781 294855 10.55 329636 14 31563 293908 9.70 325471 15 30603 295631 9.38 326234 16 32044 302464 9.58 334508 17 30053 305326 8.96 335379 18 30685 305021 9.14 335706 19 32036 309984 9.37 342020 20 30309 308098 8.96 338407 21 34121 310475 9.90 344596 22 30391 313027 8.85 343418 23 28999 310365 8.55 339364 24 29576 312451 8.65 342027 25 29098 318119 8.38 347217 26 29347 316552 8.48 345899 27 30292 318455 8.69 348747 28 27900 320433 8.01 348333 29 30672 318801 8.78 349473 30 28790 317161 8.32 345951 31 29961 321538 8.52 351499 32 27345 318220 7.91 345565 33 29237 317628 8.43 346865 34 29044 320528 8.31 349572 35 26281 318305 7.63 344586 36 28509 318325 8.22 346834 37 28673 320149 8.22 348822 38 26239 316579 7.65 342818 39 25109 316231 7.36 341340 40 25826 315692 7.56 341518 41 25964 312373 7.67 338337 42 25517 310567 7.59 336084 43 26225 310752 7.78 336977 44 24341 306933 7.35 331274 45 25829 303930 7.83 329759 46 24454 304473 7.43 328927 47 25658 298660 7.91 324318 48 24212 296646 7.55 320858 49 24062 295106 7.54 319168 50 23286 289709 7.44 312995 51 22640 285445 7.35 308085 52 21755 286401 7.06 308156 53 22427 282680 7.35 305107 54 22175 279242 7.36 301417 55 22301 277464 7.44 299765 56 21017 272367 7.16 293384 57 20548 269003 7.10 289551 58 21244 268229 7.34 289473 59 19850 262961 7.02 282811 60 19876 260045 7.10 279921 61 20316 255749 7.36 276065 62 19279 250054 7.16 269333 63 19595 248050 7.32 267645 64 17807 244396 6.79 262203 65 18206 239967 7.05 258173 66 17193 235927 6.79 253120 67 17070 233770 6.81 250840 68 16529 229678 6.71 246207 69 17302 224799 7.15 242101 70 15748 222484 6.61 238232 71 15943 217677 6.82 233620 72 14916 214142 6.51 229058 73 15779 212618 6.91 228397 74 15733 208188 7.03 223921 75 16018 204526 7.26 220544 76 15591 197816 7.31 213407 77 14338 186761 7.13 201099 78 14901 164763 8.29 179664 79 12447 118004 9.54 130451 80 6499 34783 15.74 41282 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 301868 893626 25.25 1195494 2 280741 908282 23.61 1189023 3 252300 891925 22.05 1144225 4 246048 887991 21.70 1134039 5 247969 907780 21.46 1155749 6 257011 884328 22.52 1141339 7 239637 877179 21.46 1116816 8 234090 870500 21.19 1104590 9 247420 877973 21.99 1125393 10 249026 886697 21.93 1135723 11 245744 903938 21.37 1149682 12 252677 919454 21.56 1172131 13 260210 919628 22.05 1179838 14 242240 939413 20.50 1181653 15 250251 951215 20.83 1201466 16 259476 953551 21.39 1213027 17 245562 961726 20.34 1207288 18 249000 976841 20.31 1225841 19 252889 971613 20.65 1224502 20 246586 984041 20.04 1230627 21 249333 986428 20.18 1235761 22 248170 979694 20.21 1227864 23 237213 979721 19.49 1216934 24 243778 992792 19.71 1236570 25 244802 992569 19.78 1237371 26 236869 999594 19.16 1236463 27 245930 1001901 19.71 1247831 28 247587 997398 19.89 1244985 29 239671 998444 19.36 1238115 30 239327 1004082 19.25 1243409 31 239049 994850 19.37 1233899 32 226655 999933 18.48 1226588 33 230930 994492 18.84 1225422 34 227812 986582 18.76 1214394 35 220824 991934 18.21 1212758 36 223354 994232 18.34 1217586 37 221627 982282 18.41 1203909 38 217364 980318 18.15 1197682 39 210444 975856 17.74 1186300 40 210389 965121 17.90 1175510 41 202455 957906 17.45 1160361 42 200337 956426 17.32 1156763 43 201708 941450 17.64 1143158 44 189973 936085 16.87 1126058 45 191148 927549 17.09 1118697 46 185134 913248 16.86 1098382 47 178185 901121 16.51 1079306 48 176190 898523 16.39 1074713 49 174544 880595 16.54 1055139 50 164766 873627 15.87 1038393 51 164087 858083 16.05 1022170 52 160688 850310 15.89 1010998 53 159996 839747 16.00 999743 54 152559 830520 15.52 983079 55 149950 814700 15.54 964650 56 141667 803180 14.99 944847 57 139847 791934 15.01 931781 58 136740 780801 14.90 917541 59 128239 768410 14.30 896649 60 126186 757805 14.27 883991 61 124846 740817 14.42 865663 62 114268 729711 13.54 843979 63 114090 721593 13.65 835683 64 110205 709073 13.45 819278 65 104176 695536 13.03 799712 66 102924 688231 13.01 791155 67 100199 674427 12.94 774626 68 98824 664037 12.95 762861 69 96797 655208 12.87 752005 70 92634 641075 12.63 733709 71 90334 629723 12.55 720057 72 87811 623880 12.34 711691 73 89255 610862 12.75 700117 74 81695 602026 11.95 683721 75 82612 588114 12.32 670726 76 80353 570616 12.34 650969 77 76532 539453 12.42 615985 78 71874 481958 12.98 553832 79 63937 349958 15.45 413895 80 35407 105754 25.08 141161 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 107576 58707 64.69 166283 2 103141 41713 71.20 144854 3 118114 39461 74.96 157575 4 86390 36780 70.14 123170 5 83268 32530 71.91 115798 6 82594 30002 73.35 112596 7 87390 33792 72.11 121182 8 83518 28825 74.34 112343 9 81305 27375 74.81 108680 10 84654 28045 75.12 112699 11 83372 28703 74.39 112075 12 79086 26561 74.86 105647 13 78989 25361 75.70 104350 14 80103 25545 75.82 105648 15 78754 24755 76.08 103509 16 77293 23815 76.45 101108 17 75564 23644 76.17 99208 18 71697 21966 76.55 93663 19 70311 21251 76.79 91562 20 68377 20418 77.01 88795 21 68274 19961 77.38 88235 22 66707 19616 77.28 86323 23 65696 19224 77.36 84920 24 64090 18659 77.45 82749 25 64876 19205 77.16 84081 26 63198 18142 77.70 81340 27 59470 16860 77.91 76330 28 60077 17221 77.72 77298 29 58336 16108 78.36 74444 30 56604 15406 78.61 72010 31 56488 15814 78.13 72302 32 56349 15065 78.90 71414 33 53627 14171 79.10 67798 34 54619 14690 78.81 69309 35 52624 13786 79.24 66410 36 50474 12964 79.56 63438 37 50222 13007 79.43 63229 38 49918 12897 79.47 62815 39 48462 12658 79.29 61120 40 48980 12725 79.38 61705 41 45403 11971 79.14 57374 42 43940 11281 79.57 55221 43 43880 11031 79.91 54911 44 43591 10981 79.88 54572 45 41460 10358 80.01 51818 46 41545 10512 79.81 52057 47 40767 10748 79.14 51515 48 38872 9669 80.08 48541 49 38405 9740 79.77 48145 50 37193 9501 79.65 46694 51 35447 9019 79.72 44466 52 35028 9147 79.29 44175 53 34212 8753 79.63 42965 54 33652 8567 79.71 42219 55 33316 8495 79.68 41811 56 32724 8386 79.60 41110 57 32773 8379 79.64 41152 58 30627 7931 79.43 38558 59 29837 7739 79.40 37576 60 28431 7487 79.16 35918 61 28368 7437 79.23 35805 62 27402 7136 79.34 34538 63 26748 6932 79.42 33680 64 26356 6973 79.08 33329 65 25256 6699 79.04 31955 66 24387 6427 79.14 30814 67 23898 6228 79.33 30126 68 23308 6206 78.97 29514 69 22193 5994 78.73 28187 70 21977 5946 78.71 27923 71 21364 6061 77.90 27425 72 20759 5661 78.57 26420 73 20398 5643 78.33 26041 74 19800 5685 77.69 25485 75 18600 5264 77.94 23864 76 18167 5103 78.07 23270 77 17460 5238 76.92 22698 78 16721 5093 76.65 21814 79 14631 4520 76.40 19151 80 10406 3457 75.06 13863 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20849 255107 7.56 275956 2 17761 217985 7.53 235746 3 25588 215538 10.61 241126 4 12809 212908 5.67 225717 5 12210 172574 6.61 184784 6 11809 170414 6.48 182223 7 12063 169791 6.63 181854 8 13455 187497 6.70 200952 9 11023 158707 6.49 169730 10 10833 154502 6.55 165335 11 10750 158571 6.35 169321 12 10927 162507 6.30 173434 13 10006 153878 6.11 163884 14 10192 147429 6.47 157621 15 10228 152843 6.27 163071 16 9544 144576 6.19 154120 17 9267 136288 6.37 145555 18 9287 138758 6.27 148045 19 8800 129583 6.36 138383 20 8849 127407 6.49 136256 21 8563 127727 6.28 136290 22 8183 120868 6.34 129051 23 8249 122544 6.31 130793 24 7643 120609 5.96 128252 25 8009 113074 6.61 121083 26 8127 111081 6.82 119208 27 7979 113447 6.57 121426 28 7527 108308 6.50 115835 29 7154 110463 6.08 117617 30 6677 103791 6.04 110468 31 6854 103282 6.22 110136 32 6243 100271 5.86 106514 33 6503 102445 5.97 108948 34 6249 93549 6.26 99798 35 6043 93418 6.08 99461 36 5829 91855 5.97 97684 37 5800 86114 6.31 91914 38 6076 86332 6.58 92408 39 5753 87886 6.14 93639 40 5778 82736 6.53 88514 41 5619 82989 6.34 88608 42 5070 81624 5.85 86694 43 4881 77331 5.94 82212 44 4876 74445 6.15 79321 45 4730 75946 5.86 80676 46 4537 71089 6.00 75626 47 4502 72207 5.87 76709 48 4467 69600 6.03 74067 49 4306 66399 6.09 70705 50 4123 64523 6.01 68646 51 4212 64840 6.10 69052 52 4074 61799 6.18 65873 53 4075 60492 6.31 64567 54 4013 59419 6.33 63432 55 3431 57448 5.64 60879 56 3363 56696 5.60 60059 57 3585 57407 5.88 60992 58 3293 52986 5.85 56279 59 3191 51774 5.81 54965 60 3178 52610 5.70 55788 61 3065 48494 5.94 51559 62 3032 48028 5.94 51060 63 2902 48033 5.70 50935 64 2953 45081 6.15 48034 65 2983 44713 6.25 47696 66 2915 44179 6.19 47094 67 2786 42053 6.21 44839 68 2732 41961 6.11 44693 69 2724 40500 6.30 43224 70 2659 38985 6.39 41644 71 2549 38499 6.21 41048 72 2419 37429 6.07 39848 73 2325 36622 5.97 38947 74 2297 35068 6.15 37365 75 2310 35376 6.13 37686 76 2141 33276 6.05 35417 77 2224 31946 6.51 34170 78 1954 31184 5.90 33138 79 1643 28391 5.47 30034 80 958 20543 4.46 21501 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 86611 823223 9.52 909834 2 69274 645173 9.70 714447 3 72715 613033 10.60 685748 4 58649 580540 9.18 639189 5 57223 522490 9.87 579713 6 54059 479644 10.13 533703 7 53505 473156 10.16 526661 8 53444 464216 10.32 517660 9 54639 470412 10.41 525051 10 53267 468780 10.20 522047 11 52368 437148 10.70 489516 12 51301 431164 10.63 482465 13 50270 438654 10.28 488924 14 49706 427937 10.41 477643 15 49713 429423 10.38 479136 16 48826 426094 10.28 474920 17 47598 409973 10.40 457571 18 46415 402562 10.34 448977 19 45423 395838 10.29 441261 20 44016 379641 10.39 423657 21 43404 371377 10.46 414781 22 42118 361183 10.44 403301 23 41712 357187 10.46 398899 24 40707 347150 10.50 387857 25 40032 344497 10.41 384529 26 38601 333153 10.38 371754 27 38607 327170 10.55 365777 28 37685 326258 10.35 363943 29 37167 314074 10.58 351241 30 36645 306598 10.68 343243 31 36657 312861 10.49 349518 32 35032 293664 10.66 328696 33 34553 285580 10.79 320133 34 33524 286785 10.47 320309 35 32855 278927 10.54 311782 36 31855 273627 10.43 305482 37 31090 271182 10.29 302272 38 29668 262707 10.15 292375 39 29022 257268 10.14 286290 40 29377 255611 10.31 284988 41 28016 249103 10.11 277119 42 27578 240008 10.31 267586 43 26902 239596 10.09 266498 44 26093 228120 10.26 254213 45 25371 221670 10.27 247041 46 25109 224173 10.07 249282 47 24404 215860 10.16 240264 48 23970 214959 10.03 238929 49 23067 214997 9.69 238064 50 21997 199046 9.95 221043 51 21516 193585 10.00 215101 52 21128 197931 9.64 219059 53 20457 182345 10.09 202802 54 20492 176929 10.38 197421 55 20077 176681 10.20 196758 56 19619 171151 10.28 190770 57 19460 170583 10.24 190043 58 18748 163560 10.28 182308 59 18171 163753 9.99 181924 60 17650 155621 10.19 173271 61 17273 151427 10.24 168700 62 16316 147256 9.97 163572 63 16054 143864 10.04 159918 64 15457 146274 9.56 161731 65 15058 136995 9.90 152053 66 14658 132866 9.94 147524 67 14540 132290 9.90 146830 68 13955 133704 9.45 147659 69 13538 128738 9.52 142276 70 13202 123363 9.67 136565 71 13011 120459 9.75 133470 72 12705 118539 9.68 131244 73 12176 111907 9.81 124083 74 11798 108196 9.83 119994 75 11518 105202 9.87 116720 76 10830 102904 9.52 113734 77 10063 99451 9.19 109514 78 9087 96788 8.58 105875 79 7217 89354 7.47 96571 80 4539 64017 6.62 68556