zr2096_2_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9845196 lines in total Total number of methylation call strings processed: 19690392 Final Cytosine Methylation Report ================================= Total number of C's analysed: 136229712 Total methylated C's in CpG context: 11879226 Total methylated C's in CHG context: 2157657 Total methylated C's in CHH context: 17634457 Total C to T conversions in CpG context: 4507158 Total C to T conversions in CHG context: 24233929 Total C to T conversions in CHH context: 75817285 C methylated in CpG context: 72.5% C methylated in CHG context: 8.2% C methylated in CHH context: 18.9%