CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 151121 58389 72.13 209510 2 165772 60147 73.38 225919 3 134543 59367 69.38 193910 4 129920 53688 70.76 183608 5 132556 54007 71.05 186563 6 133302 54095 71.13 187397 7 129260 54147 70.48 183407 8 132398 53817 71.10 186215 9 136220 52487 72.19 188707 10 139786 53096 72.47 192882 11 142645 53183 72.84 195828 12 144298 52524 73.31 196822 13 143431 51875 73.44 195306 14 142995 52692 73.07 195687 15 143781 52345 73.31 196126 16 142999 51562 73.50 194561 17 143555 51993 73.41 195548 18 147416 52391 73.78 199807 19 145215 51555 73.80 196770 20 147160 51682 74.01 198842 21 146983 51459 74.07 198442 22 146644 52665 73.58 199309 23 145574 52527 73.48 198101 24 147676 51740 74.05 199416 25 146636 51845 73.88 198481 26 146051 52655 73.50 198706 27 147848 52004 73.98 199852 28 147533 51214 74.23 198747 29 147224 52341 73.77 199565 30 149095 51716 74.25 200811 31 146402 51033 74.15 197435 32 146306 51975 73.79 198281 33 148172 51575 74.18 199747 34 144338 50939 73.91 195277 35 143644 51568 73.58 195212 36 143455 51110 73.73 194565 37 142566 49658 74.17 192224 38 141704 50111 73.88 191815 39 141834 49644 74.07 191478 40 139399 48707 74.11 188106 41 136603 48716 73.71 185319 42 136032 48644 73.66 184676 43 134668 47630 73.87 182298 44 133145 48357 73.36 181502 45 132759 47422 73.68 180181 46 130125 46778 73.56 176903 47 128645 46544 73.43 175189 48 126992 46413 73.23 173405 49 124364 44266 73.75 168630 50 121608 44966 73.01 166574 51 120286 44415 73.03 164701 52 117529 42863 73.28 160392 53 116390 42447 73.28 158837 54 115275 42237 73.18 157512 55 112799 41193 73.25 153992 56 110721 41210 72.88 151931 57 108706 40414 72.90 149120 58 107202 39403 73.12 146605 59 104316 39016 72.78 143332 60 102937 38655 72.70 141592 61 100590 37477 72.86 138067 62 97797 36986 72.56 134783 63 96568 36524 72.56 133092 64 94358 34977 72.96 129335 65 90891 34685 72.38 125576 66 89854 34383 72.32 124237 67 88124 33041 72.73 121165 68 85595 32772 72.31 118367 69 85019 32168 72.55 117187 70 82553 31478 72.40 114031 71 80298 31152 72.05 111450 72 78192 30306 72.07 108498 73 76262 29523 72.09 105785 74 73635 29636 71.30 103271 75 71645 29173 71.06 100818 76 69079 27616 71.44 96695 77 64795 26132 71.26 90927 78 57262 23010 71.33 80272 79 41269 16678 71.22 57947 80 13833 5167 72.81 19000 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 68085 260432 20.72 328517 2 40536 260370 13.47 300906 3 35483 253773 12.27 289256 4 33064 256731 11.41 289795 5 36500 256222 12.47 292722 6 36697 254685 12.59 291382 7 30074 265069 10.19 295143 8 29891 260339 10.30 290230 9 32975 263514 11.12 296489 10 29871 271548 9.91 301419 11 28115 266343 9.55 294458 12 27805 267269 9.42 295074 13 30731 272898 10.12 303629 14 28035 272527 9.33 300562 15 27173 273425 9.04 300598 16 28007 280293 9.08 308300 17 26421 281793 8.57 308214 18 27557 281998 8.90 309555 19 27525 287042 8.75 314567 20 26328 284938 8.46 311266 21 30531 286456 9.63 316987 22 28018 289690 8.82 317708 23 25811 287372 8.24 313183 24 26106 286860 8.34 312966 25 26463 293165 8.28 319628 26 25612 290246 8.11 315858 27 26807 291901 8.41 318708 28 25393 294554 7.94 319947 29 27292 291843 8.55 319135 30 25958 288910 8.24 314868 31 27042 292361 8.47 319403 32 25079 290749 7.94 315828 33 26800 287629 8.52 314429 34 26690 290457 8.42 317147 35 24458 286731 7.86 311189 36 25737 285170 8.28 310907 37 25700 287110 8.22 312810 38 24207 283138 7.88 307345 39 23026 281620 7.56 304646 40 23462 281265 7.70 304727 41 23461 277439 7.80 300900 42 23013 273852 7.75 296865 43 23782 273435 8.00 297217 44 22278 269332 7.64 291610 45 23811 265032 8.24 288843 46 22145 265581 7.70 287726 47 22748 259620 8.06 282368 48 21574 257121 7.74 278695 49 21736 255279 7.85 277015 50 20297 249599 7.52 269896 51 19941 244576 7.54 264517 52 18904 244872 7.17 263776 53 19327 239700 7.46 259027 54 19663 235295 7.71 254958 55 19020 233489 7.53 252509 56 18038 228572 7.31 246610 57 17608 224235 7.28 241843 58 17432 221791 7.29 239223 59 16651 215098 7.18 231749 60 16365 213111 7.13 229476 61 16643 208462 7.39 225105 62 15425 203608 7.04 219033 63 15505 199634 7.21 215139 64 14316 196589 6.79 210905 65 13890 192228 6.74 206118 66 13391 187067 6.68 200458 67 13227 184927 6.68 198154 68 12397 180671 6.42 193068 69 13018 176005 6.89 189023 70 12046 173029 6.51 185075 71 11900 168432 6.60 180332 72 11480 164708 6.52 176188 73 11937 162123 6.86 174060 74 11566 158417 6.80 169983 75 11716 154584 7.05 166300 76 11414 148823 7.12 160237 77 10614 139944 7.05 150558 78 10513 122839 7.88 133352 79 9026 86760 9.42 95786 80 4619 24867 15.67 29486 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 324303 872102 27.11 1196405 2 301337 887460 25.35 1188797 3 280293 869639 24.37 1149932 4 273356 862487 24.07 1135843 5 272878 875564 23.76 1148442 6 280625 862238 24.55 1142863 7 269253 849506 24.07 1118759 8 258205 848306 23.34 1106511 9 278256 854692 24.56 1132948 10 280385 860628 24.57 1141013 11 276147 884507 23.79 1160654 12 285326 898331 24.11 1183657 13 295285 897902 24.75 1193187 14 274040 918589 22.98 1192629 15 286367 929625 23.55 1215992 16 296055 928315 24.18 1224370 17 279347 940619 22.90 1219966 18 285177 953753 23.02 1238930 19 290158 949036 23.42 1239194 20 279615 963941 22.49 1243556 21 284367 960482 22.84 1244849 22 283125 949513 22.97 1232638 23 267011 949751 21.94 1216762 24 277966 956837 22.51 1234803 25 281108 957833 22.69 1238941 26 268144 963471 21.77 1231615 27 280497 965752 22.51 1246249 28 279096 957538 22.57 1236634 29 267383 957070 21.84 1224453 30 269416 960025 21.91 1229441 31 267606 947528 22.02 1215134 32 251697 951625 20.92 1203322 33 256627 939555 21.45 1196182 34 253748 929484 21.45 1183232 35 245069 932446 20.81 1177515 36 246768 928174 21.00 1174942 37 247626 914227 21.31 1161853 38 236854 910229 20.65 1147083 39 230822 903745 20.34 1134567 40 231058 890904 20.59 1121962 41 220053 882125 19.97 1102178 42 217680 875850 19.91 1093530 43 216069 855550 20.16 1071619 44 201248 847274 19.19 1048522 45 201925 834137 19.49 1036062 46 194982 818943 19.23 1013925 47 185838 805519 18.75 991357 48 182070 797124 18.59 979194 49 179962 776869 18.81 956831 50 167604 767662 17.92 935266 51 165886 747292 18.17 913178 52 161782 737985 17.98 899767 53 157282 723988 17.85 881270 54 149421 712724 17.33 862145 55 146741 695706 17.42 842447 56 135509 682176 16.57 817685 57 132741 668754 16.56 801495 58 128124 651774 16.43 779898 59 118866 636964 15.73 755830 60 117786 624898 15.86 742684 61 115707 606918 16.01 722625 62 103895 595026 14.87 698921 63 101648 584233 14.82 685881 64 97817 569588 14.66 667405 65 91148 556330 14.08 647478 66 89192 546822 14.02 636014 67 87169 533921 14.03 621090 68 83640 520765 13.84 604405 69 81687 511282 13.78 592969 70 77871 498008 13.52 575879 71 73462 485681 13.14 559143 72 71777 477337 13.07 549114 73 73267 464863 13.62 538130 74 66912 456217 12.79 523129 75 66124 444348 12.95 510472 76 65483 426977 13.30 492460 77 61094 403411 13.15 464505 78 56628 356056 13.72 412684 79 49883 254873 16.37 304756 80 27004 75363 26.38 102367 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 80475 56322 58.83 136797 2 70997 37122 65.67 108119 3 79995 32877 70.87 112872 4 54235 30139 64.28 84374 5 52755 26647 66.44 79402 6 51171 24426 67.69 75597 7 54119 27019 66.70 81138 8 51421 23307 68.81 74728 9 50522 22286 69.39 72808 10 51579 22996 69.16 74575 11 50160 23167 68.41 73327 12 47615 21878 68.52 69493 13 47220 20851 69.37 68071 14 47123 20903 69.27 68026 15 46186 19750 70.05 65936 16 45408 18751 70.77 64159 17 43832 18498 70.32 62330 18 40916 16975 70.68 57891 19 40369 16737 70.69 57106 20 38871 15986 70.86 54857 21 37903 15381 71.13 53284 22 37215 14911 71.39 52126 23 36246 14710 71.13 50956 24 35188 13800 71.83 48988 25 35412 14071 71.56 49483 26 33816 13417 71.59 47233 27 32190 12559 71.93 44749 28 32234 12658 71.80 44892 29 30947 12289 71.58 43236 30 29615 11186 72.58 40801 31 30109 11527 72.31 41636 32 29355 10931 72.87 40286 33 27908 10588 72.50 38496 34 28685 10707 72.82 39392 35 27222 9905 73.32 37127 36 25979 9491 73.24 35470 37 25244 9481 72.70 34725 38 24818 9055 73.27 33873 39 24018 8969 72.81 32987 40 24228 9148 72.59 33376 41 22792 8417 73.03 31209 42 21890 7736 73.89 29626 43 21432 7839 73.22 29271 44 21159 7667 73.40 28826 45 20428 7175 74.01 27603 46 19900 7320 73.11 27220 47 19224 7219 72.70 26443 48 18274 6689 73.20 24963 49 18025 6524 73.42 24549 50 17296 6343 73.17 23639 51 16569 5968 73.52 22537 52 16463 5925 73.53 22388 53 15711 5753 73.20 21464 54 15491 5584 73.50 21075 55 15427 5661 73.16 21088 56 14757 5557 72.64 20314 57 14703 5524 72.69 20227 58 13814 5083 73.10 18897 59 13297 5080 72.36 18377 60 12560 4784 72.42 17344 61 12386 4579 73.01 16965 62 12144 4459 73.14 16603 63 11621 4331 72.85 15952 64 11190 4174 72.83 15364 65 10852 4176 72.21 15028 66 10494 3887 72.97 14381 67 10041 3912 71.96 13953 68 9849 3821 72.05 13670 69 9509 3662 72.20 13171 70 9341 3596 72.20 12937 71 9042 3705 70.93 12747 72 8634 3393 71.79 12027 73 8128 3525 69.75 11653 74 8161 3458 70.24 11619 75 7843 3126 71.50 10969 76 7476 3180 70.16 10656 77 6985 3101 69.25 10086 78 6580 2971 68.89 9551 79 5966 2738 68.54 8704 80 4293 2094 67.21 6387 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18469 223771 7.62 242240 2 14010 175584 7.39 189594 3 19779 166798 10.60 186577 4 9036 161081 5.31 170117 5 8621 127392 6.34 136013 6 8368 124320 6.31 132688 7 8492 123472 6.44 131964 8 9791 137351 6.65 147142 9 7376 113676 6.09 121052 10 7391 110305 6.28 117696 11 7447 112926 6.19 120373 12 7343 116204 5.94 123547 13 6931 108037 6.03 114968 14 6729 103734 6.09 110463 15 6820 106130 6.04 112950 16 6292 99947 5.92 106239 17 5930 94452 5.91 100382 18 6091 94378 6.06 100469 19 5707 86617 6.18 92324 20 5693 85370 6.25 91063 21 5377 84408 5.99 89785 22 5287 78657 6.30 83944 23 5216 80315 6.10 85531 24 4949 79408 5.87 84357 25 5015 73347 6.40 78362 26 5016 71128 6.59 76144 27 4978 72729 6.41 77707 28 4809 68147 6.59 72956 29 4374 69112 5.95 73486 30 4106 65523 5.90 69629 31 4316 64438 6.28 68754 32 3882 62838 5.82 66720 33 3923 63691 5.80 67614 34 3709 57789 6.03 61498 35 3609 57759 5.88 61368 36 3497 56231 5.85 59728 37 3359 52432 6.02 55791 38 3480 51884 6.29 55364 39 3458 52183 6.21 55641 40 3285 49185 6.26 52470 41 3280 48951 6.28 52231 42 2901 47746 5.73 50647 43 2845 45195 5.92 48040 44 2746 43803 5.90 46549 45 2709 43714 5.84 46423 46 2588 41082 5.93 43670 47 2526 41230 5.77 43756 48 2429 39248 5.83 41677 49 2376 37824 5.91 40200 50 2276 36411 5.88 38687 51 2273 36857 5.81 39130 52 2218 34262 6.08 36480 53 2352 33013 6.65 35365 54 2208 32402 6.38 34610 55 1898 31559 5.67 33457 56 1805 30723 5.55 32528 57 1925 30823 5.88 32748 58 1787 28672 5.87 30459 59 1733 28221 5.79 29954 60 1671 28017 5.63 29688 61 1751 25992 6.31 27743 62 1540 25289 5.74 26829 63 1535 25052 5.77 26587 64 1636 23810 6.43 25446 65 1584 23179 6.40 24763 66 1482 23005 6.05 24487 67 1417 21808 6.10 23225 68 1472 20914 6.58 22386 69 1452 20625 6.58 22077 70 1310 19823 6.20 21133 71 1341 19265 6.51 20606 72 1234 18847 6.15 20081 73 1195 17864 6.27 19059 74 1101 17409 5.95 18510 75 1151 17620 6.13 18771 76 1139 16372 6.50 17511 77 1066 15800 6.32 16866 78 979 15491 5.94 16470 79 800 13964 5.42 14764 80 463 10116 4.38 10579 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 82288 725906 10.18 808194 2 59130 520324 10.20 579454 3 60437 476216 11.26 536653 4 47482 436520 9.81 484002 5 44811 388064 10.35 432875 6 42855 351261 10.87 394116 7 41571 343746 10.79 385317 8 41311 336427 10.94 377738 9 42602 338496 11.18 381098 10 41384 335518 10.98 376902 11 40536 311023 11.53 351559 12 39628 307195 11.43 346823 13 39035 310582 11.17 349617 14 37860 303482 11.09 341342 15 38262 301608 11.26 339870 16 36933 298637 11.01 335570 17 35717 285256 11.13 320973 18 34173 277735 10.96 311908 19 33741 268123 11.18 301864 20 31801 255506 11.07 287307 21 31652 249693 11.25 281345 22 30767 239144 11.40 269911 23 29887 235109 11.28 264996 24 29063 226312 11.38 255375 25 28607 223784 11.33 252391 26 27336 216653 11.20 243989 27 27517 210828 11.55 238345 28 26494 207952 11.30 234446 29 26017 200286 11.50 226303 30 25504 193838 11.63 219342 31 25266 197539 11.34 222805 32 24238 183675 11.66 207913 33 23929 178805 11.80 202734 34 22851 178127 11.37 200978 35 22541 172494 11.56 195035 36 21415 168584 11.27 189999 37 21099 165268 11.32 186367 38 19831 159164 11.08 178995 39 19911 155989 11.32 175900 40 19515 154634 11.21 174149 41 19089 149828 11.30 168917 42 18245 142144 11.38 160389 43 18039 140255 11.40 158294 44 17258 133774 11.43 151032 45 17005 128843 11.66 145848 46 16496 129285 11.32 145781 47 15920 124232 11.36 140152 48 15534 123989 11.13 139523 49 14922 122251 10.88 137173 50 13974 112826 11.02 126800 51 13962 108894 11.36 122856 52 13608 110478 10.97 124086 53 13284 101068 11.62 114352 54 12984 98074 11.69 111058 55 12887 96657 11.76 109544 56 12234 93589 11.56 105823 57 12360 92894 11.74 105254 58 11646 87733 11.72 99379 59 11098 87846 11.22 98944 60 11144 83326 11.80 94470 61 10819 79845 11.93 90664 62 10208 77898 11.59 88106 63 9911 75665 11.58 85576 64 9426 76409 10.98 85835 65 9047 71322 11.26 80369 66 8931 68135 11.59 77066 67 8602 67741 11.27 76343 68 8457 68372 11.01 76829 69 8336 65789 11.25 74125 70 7862 62461 11.18 70323 71 7834 60748 11.42 68582 72 7613 59558 11.33 67171 73 7315 56028 11.55 63343 74 6967 53278 11.56 60245 75 6818 51410 11.71 58228 76 6419 50128 11.35 56547 77 5885 48192 10.88 54077 78 5372 47299 10.20 52671 79 4157 43647 8.70 47804 80 2419 31109 7.21 33528