zr2096_1_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4608225 lines in total Total number of methylation call strings processed: 9216450 Final Cytosine Methylation Report ================================= Total number of C's analysed: 72332983 Total methylated C's in CpG context: 6025223 Total methylated C's in CHG context: 1114246 Total methylated C's in CHH context: 8658535 Total C to T conversions in CpG context: 2420764 Total C to T conversions in CHG context: 12288170 Total C to T conversions in CHH context: 41826045 C methylated in CpG context: 71.3% C methylated in CHG context: 8.3% C methylated in CHH context: 17.2%