CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 66497 27881 70.46 94378 2 75304 28998 72.20 104302 3 59722 28613 67.61 88335 4 56579 25574 68.87 82153 5 56751 25844 68.71 82595 6 57862 25983 69.01 83845 7 56526 25990 68.50 82516 8 57790 25146 69.68 82936 9 59569 25241 70.24 84810 10 60965 25105 70.83 86070 11 62711 25702 70.93 88413 12 63037 25338 71.33 88375 13 61442 25100 71.00 86542 14 62255 25575 70.88 87830 15 62954 25268 71.36 88222 16 62527 25220 71.26 87747 17 62064 25216 71.11 87280 18 64055 25259 71.72 89314 19 63646 25031 71.77 88677 20 63553 25064 71.72 88617 21 63729 25432 71.48 89161 22 63731 25366 71.53 89097 23 63048 25225 71.42 88273 24 64607 24945 72.14 89552 25 63807 24872 71.95 88679 26 63729 25394 71.51 89123 27 65395 24893 72.43 90288 28 64457 24792 72.22 89249 29 64194 24931 72.03 89125 30 65136 25237 72.07 90373 31 64528 24382 72.58 88910 32 64833 24979 72.19 89812 33 66581 24673 72.96 91254 34 64540 24256 72.68 88796 35 63758 24616 72.15 88374 36 64928 24425 72.66 89353 37 63914 23825 72.85 87739 38 63980 24018 72.71 87998 39 65162 23813 73.24 88975 40 63686 23525 73.03 87211 41 62739 23563 72.70 86302 42 63016 23464 72.87 86480 43 61512 23201 72.61 84713 44 61172 23294 72.42 84466 45 61307 22842 72.86 84149 46 60849 22832 72.72 83681 47 60569 22730 72.71 83299 48 60353 22581 72.77 82934 49 58742 22231 72.55 80973 50 57702 22135 72.27 79837 51 57616 22206 72.18 79822 52 56639 21470 72.51 78109 53 56040 21064 72.68 77104 54 55661 20912 72.69 76573 55 55112 20825 72.58 75937 56 54514 20567 72.61 75081 57 54119 20360 72.66 74479 58 52635 20240 72.23 72875 59 52076 19963 72.29 72039 60 51768 19725 72.41 71493 61 50508 19207 72.45 69715 62 50045 19263 72.21 69308 63 49250 18837 72.33 68087 64 48460 18864 71.98 67324 65 47617 18441 72.08 66058 66 47019 18253 72.04 65272 67 46305 18032 71.97 64337 68 45737 17605 72.21 63342 69 45299 17720 71.88 63019 70 44212 17392 71.77 61604 71 43477 16871 72.04 60348 72 43159 16705 72.10 59864 73 42076 16675 71.62 58751 74 40678 16538 71.10 57216 75 40071 16440 70.91 56511 76 38645 15866 70.89 54511 77 36887 14954 71.15 51841 78 32742 13647 70.58 46389 79 24257 9893 71.03 34150 80 8191 3148 72.24 11339 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 35284 112880 23.81 148164 2 19907 113813 14.89 133720 3 17118 110173 13.45 127291 4 15750 109979 12.53 125729 5 16757 110772 13.14 127529 6 18022 110507 14.02 128529 7 14353 114377 11.15 128730 8 14356 112397 11.33 126753 9 15482 113411 12.01 128893 10 14222 116845 10.85 131067 11 13642 116727 10.46 130369 12 12999 116297 10.05 129296 13 14437 119045 10.82 133482 14 13257 119449 9.99 132706 15 13008 118768 9.87 131776 16 13399 121075 9.96 134474 17 12457 122429 9.24 134886 18 13047 122310 9.64 135357 19 13220 124648 9.59 137868 20 12568 123928 9.21 136496 21 14311 124900 10.28 139211 22 13053 125483 9.42 138536 23 11910 124917 8.70 136827 24 12179 125678 8.83 137857 25 12111 127700 8.66 139811 26 12233 127187 8.77 139420 27 12877 127669 9.16 140546 28 12166 128005 8.68 140171 29 12636 128690 8.94 141326 30 11976 127174 8.61 139150 31 12807 129206 9.02 142013 32 11724 128617 8.35 140341 33 12490 127593 8.92 140083 34 12587 128274 8.94 140861 35 11473 127887 8.23 139360 36 11980 127644 8.58 139624 37 12437 128419 8.83 140856 38 11103 127660 8.00 138763 39 10803 127373 7.82 138176 40 11184 126986 8.09 138170 41 11083 125750 8.10 136833 42 10645 125180 7.84 135825 43 10805 124676 7.98 135481 44 10428 124046 7.75 134474 45 11108 123351 8.26 134459 46 10386 123069 7.78 133455 47 10818 120853 8.22 131671 48 10173 119701 7.83 129874 49 10560 119615 8.11 130175 50 9740 118060 7.62 127800 51 9611 115354 7.69 124965 52 9190 115959 7.34 125149 53 9393 114661 7.57 124054 54 8987 113732 7.32 122719 55 9298 113374 7.58 122672 56 8906 111026 7.43 119932 57 8660 109909 7.30 118569 58 8588 109705 7.26 118293 59 8279 107159 7.17 115438 60 8214 106200 7.18 114414 61 8382 104496 7.43 112878 62 8108 102191 7.35 110299 63 8055 101535 7.35 109590 64 7445 100600 6.89 108045 65 7452 98938 7.00 106390 66 7109 97716 6.78 104825 67 6876 96922 6.62 103798 68 6817 94917 6.70 101734 69 6981 93404 6.95 100385 70 6366 92613 6.43 98979 71 6451 90156 6.68 96607 72 6177 89016 6.49 95193 73 6537 88433 6.88 94970 74 6529 87473 6.95 94002 75 6597 85091 7.20 91688 76 6428 83491 7.15 89919 77 6220 78184 7.37 84404 78 6091 70284 7.98 76375 79 5153 50441 9.27 55594 80 2824 14886 15.95 17710 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 154600 407307 27.51 561907 2 139534 418363 25.01 557897 3 130254 408995 24.15 539249 4 124106 404863 23.46 528969 5 123433 414134 22.96 537567 6 129601 404339 24.27 533940 7 123614 399844 23.61 523458 8 119478 401092 22.95 520570 9 127646 401901 24.10 529547 10 128458 405356 24.06 533814 11 125546 419770 23.02 545316 12 129575 426804 23.29 556379 13 130791 425730 23.50 556521 14 122224 438898 21.78 561122 15 129987 441296 22.75 571283 16 133446 441685 23.20 575131 17 122563 449107 21.44 571670 18 127089 454822 21.84 581911 19 129043 452106 22.20 581149 20 124342 459823 21.29 584165 21 127867 457929 21.83 585796 22 126726 452012 21.90 578738 23 119826 453818 20.89 573644 24 126370 455301 21.73 581671 25 126838 456799 21.73 583637 26 122633 459845 21.05 582478 27 126217 462460 21.44 588677 28 127281 457917 21.75 585198 29 120908 461581 20.76 582489 30 122561 465161 20.85 587722 31 119915 459543 20.69 579458 32 113555 462395 19.72 575950 33 115704 458323 20.16 574027 34 116150 453927 20.37 570077 35 111888 457974 19.63 569862 36 113674 456925 19.92 570599 37 113134 450986 20.05 564120 38 109885 451146 19.59 561031 39 105985 449174 19.09 555159 40 106971 445240 19.37 552211 41 102672 442689 18.83 545361 42 101110 441640 18.63 542750 43 101321 433210 18.96 534531 44 94732 428798 18.09 523530 45 94742 425297 18.22 520039 46 92297 416511 18.14 508808 47 88868 413333 17.70 502201 48 87427 410147 17.57 497574 49 86520 401209 17.74 487729 50 80726 398063 16.86 478789 51 79922 391290 16.96 471212 52 79057 385545 17.02 464602 53 78701 382546 17.06 461247 54 73544 378299 16.28 451843 55 73517 370559 16.56 444076 56 68847 364782 15.88 433629 57 67177 361272 15.68 428449 58 65194 352898 15.59 418092 59 60924 347905 14.90 408829 60 61099 342535 15.14 403634 61 60656 335290 15.32 395946 62 54188 330645 14.08 384833 63 53067 327586 13.94 380653 64 51666 319624 13.92 371290 65 48791 314937 13.41 363728 66 47994 309955 13.41 357949 67 47142 304496 13.41 351638 68 45265 300472 13.09 345737 69 44765 297190 13.09 341955 70 42860 290825 12.84 333685 71 41687 285567 12.74 327254 72 40195 283052 12.43 323247 73 40916 276482 12.89 317398 74 37729 272694 12.15 310423 75 37533 267430 12.31 304963 76 37203 259490 12.54 296693 77 35253 245959 12.54 281212 78 32592 220114 12.90 252706 79 29629 160508 15.58 190137 80 16559 48542 25.44 65101 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 37226 29423 55.85 66649 2 37951 20948 64.43 58899 3 46111 19162 70.64 65273 4 31394 18250 63.24 49644 5 30204 15995 65.38 46199 6 29804 14958 66.58 44762 7 33265 15700 67.94 48965 8 30917 14544 68.01 45461 9 30707 13875 68.88 44582 10 30955 14353 68.32 45308 11 30553 14900 67.22 45453 12 29494 13999 67.81 43493 13 29178 13414 68.51 42592 14 29064 13202 68.76 42266 15 29346 12751 69.71 42097 16 28770 12368 69.94 41138 17 27910 12424 69.20 40334 18 26659 11100 70.60 37759 19 26422 11125 70.37 37547 20 25910 10928 70.33 36838 21 25405 10667 70.43 36072 22 24886 10265 70.80 35151 23 24201 10244 70.26 34445 24 24095 9744 71.20 33839 25 24350 10070 70.74 34420 26 23443 9960 70.18 33403 27 22240 9053 71.07 31293 28 22714 9091 71.42 31805 29 22057 8744 71.61 30801 30 21245 8478 71.48 29723 31 21950 8447 72.21 30397 32 21233 8128 72.32 29361 33 20394 7797 72.34 28191 34 21238 7796 73.15 29034 35 19966 7523 72.63 27489 36 19493 7389 72.51 26882 37 19390 7214 72.88 26604 38 19183 7186 72.75 26369 39 18837 7014 72.87 25851 40 18768 7032 72.74 25800 41 17726 6660 72.69 24386 42 17330 6232 73.55 23562 43 16820 6170 73.16 22990 44 16838 6080 73.47 22918 45 16107 5758 73.67 21865 46 15889 5881 72.99 21770 47 15898 5965 72.72 21863 48 15298 5467 73.67 20765 49 14898 5435 73.27 20333 50 14651 5339 73.29 19990 51 13872 5083 73.18 18955 52 14073 5108 73.37 19181 53 13345 4823 73.45 18168 54 13391 4915 73.15 18306 55 13154 4711 73.63 17865 56 13029 4823 72.98 17852 57 12719 4724 72.92 17443 58 12148 4568 72.67 16716 59 11907 4438 72.85 16345 60 11674 4195 73.56 15869 61 11423 4116 73.51 15539 62 11010 4150 72.63 15160 63 10713 3994 72.84 14707 64 10471 3924 72.74 14395 65 10092 3853 72.37 13945 66 9870 3857 71.90 13727 67 9586 3680 72.26 13266 68 9722 3585 73.06 13307 69 9080 3449 72.47 12529 70 9161 3406 72.90 12567 71 8832 3365 72.41 12197 72 8490 3386 71.49 11876 73 8324 3243 71.96 11567 74 8124 3138 72.14 11262 75 7642 3060 71.41 10702 76 7668 2973 72.06 10641 77 7389 2953 71.45 10342 78 6999 2941 70.41 9940 79 6153 2724 69.31 8877 80 4451 2028 68.70 6479 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9547 105554 8.29 115101 2 8156 93503 8.02 101659 3 12317 91308 11.89 103625 4 5598 93528 5.65 99126 5 5214 73674 6.61 78888 6 5072 72615 6.53 77687 7 5271 71800 6.84 77071 8 5970 82063 6.78 88033 9 4661 67968 6.42 72629 10 4652 66269 6.56 70921 11 4565 68145 6.28 72710 12 4837 70625 6.41 75462 13 4323 66956 6.06 71279 14 4423 64172 6.45 68595 15 4358 65503 6.24 69861 16 4180 62444 6.27 66624 17 3871 59825 6.08 63696 18 3910 60256 6.09 64166 19 3694 56232 6.16 59926 20 3896 55495 6.56 59391 21 3669 55731 6.18 59400 22 3569 52707 6.34 56276 23 3450 53842 6.02 57292 24 3342 52822 5.95 56164 25 3420 49806 6.43 53226 26 3417 49160 6.50 52577 27 3372 50254 6.29 53626 28 3371 47934 6.57 51305 29 3125 48889 6.01 52014 30 2884 46547 5.83 49431 31 3064 45792 6.27 48856 32 2743 45101 5.73 47844 33 2848 45410 5.90 48258 34 2723 42271 6.05 44994 35 2684 41970 6.01 44654 36 2553 41590 5.78 44143 37 2671 38918 6.42 41589 38 2565 39204 6.14 41769 39 2605 39573 6.18 42178 40 2527 37878 6.25 40405 41 2420 37496 6.06 39916 42 2186 36887 5.59 39073 43 2187 35615 5.79 37802 44 2089 34226 5.75 36315 45 2038 34533 5.57 36571 46 2020 33236 5.73 35256 47 2023 32754 5.82 34777 48 1891 31807 5.61 33698 49 1841 30780 5.64 32621 50 1796 29863 5.67 31659 51 1988 29923 6.23 31911 52 1834 28622 6.02 30456 53 1755 27823 5.93 29578 54 1768 27529 6.03 29297 55 1534 27146 5.35 28680 56 1527 26277 5.49 27804 57 1622 26843 5.70 28465 58 1640 25223 6.11 26863 59 1489 25074 5.61 26563 60 1435 24717 5.49 26152 61 1414 22786 5.84 24200 62 1347 23022 5.53 24369 63 1372 22876 5.66 24248 64 1403 21567 6.11 22970 65 1310 21188 5.82 22498 66 1402 20972 6.27 22374 67 1266 20285 5.87 21551 68 1294 19857 6.12 21151 69 1307 19285 6.35 20592 70 1233 18754 6.17 19987 71 1255 18570 6.33 19825 72 1170 18089 6.08 19259 73 1091 17663 5.82 18754 74 1077 17039 5.95 18116 75 1074 16819 6.00 17893 76 1018 16019 5.98 17037 77 1034 15758 6.16 16792 78 886 15093 5.54 15979 79 776 13684 5.37 14460 80 522 10077 4.92 10599 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43083 364584 10.57 407667 2 34374 293905 10.47 328279 3 36221 284746 11.28 320967 4 28457 271040 9.50 299497 5 27177 242279 10.09 269456 6 25964 223855 10.39 249819 7 25792 219302 10.52 245094 8 25630 217453 10.54 243083 9 26282 221750 10.60 248032 10 25596 220007 10.42 245603 11 25312 204775 11.00 230087 12 24879 204616 10.84 229495 13 24426 208165 10.50 232591 14 24145 205704 10.50 229849 15 23845 205639 10.39 229484 16 23557 204413 10.33 227970 17 22728 199146 10.24 221874 18 21898 194736 10.11 216634 19 21087 190115 9.98 211202 20 21082 183754 10.29 204836 21 20629 180676 10.25 201305 22 20174 175450 10.31 195624 23 20123 173099 10.41 193222 24 19669 168949 10.43 188618 25 19108 166457 10.30 185565 26 18660 163433 10.25 182093 27 18603 160244 10.40 178847 28 18228 158533 10.31 176761 29 17852 154700 10.35 172552 30 17718 151231 10.49 168949 31 17420 155374 10.08 172794 32 16835 145974 10.34 162809 33 16631 142037 10.48 158668 34 16015 142876 10.08 158891 35 15857 139629 10.20 155486 36 15392 137180 10.09 152572 37 14745 135325 9.83 150070 38 14283 130802 9.84 145085 39 13964 128747 9.78 142711 40 13978 128132 9.84 142110 41 13678 125674 9.82 139352 42 13261 120582 9.91 133843 43 13229 119775 9.95 133004 44 12840 115012 10.04 127852 45 12434 111978 9.99 124412 46 12364 112679 9.89 125043 47 11893 109231 9.82 121124 48 11704 108741 9.72 120445 49 11193 108866 9.32 120059 50 10935 101628 9.71 112563 51 10583 98523 9.70 109106 52 10268 100009 9.31 110277 53 10176 93006 9.86 103182 54 9858 90746 9.80 100604 55 9839 89386 9.92 99225 56 9584 87984 9.82 97568 57 9663 87367 9.96 97030 58 9239 84426 9.86 93665 59 8963 83947 9.65 92910 60 8791 80496 9.85 89287 61 8569 77501 9.96 86070 62 8066 76231 9.57 84297 63 7978 75053 9.61 83031 64 7701 76134 9.19 83835 65 7436 71953 9.37 79389 66 7275 69595 9.46 76870 67 7074 68828 9.32 75902 68 7052 69460 9.22 76512 69 6788 67379 9.15 74167 70 6724 64868 9.39 71592 71 6740 62868 9.68 69608 72 6365 62620 9.23 68985 73 6177 59076 9.47 65253 74 5906 57054 9.38 62960 75 5733 55162 9.41 60895 76 5515 54232 9.23 59747 77 5184 52613 8.97 57797 78 4659 50696 8.42 55355 79 3817 47446 7.45 51263 80 2357 34311 6.43 36668