zr2096_10_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5866952 lines in total Total number of methylation call strings processed: 11733904 Final Cytosine Methylation Report ================================= Total number of C's analysed: 97475823 Total methylated C's in CpG context: 9026043 Total methylated C's in CHG context: 1538925 Total methylated C's in CHH context: 10243338 Total C to T conversions in CpG context: 3636169 Total C to T conversions in CHG context: 18001224 Total C to T conversions in CHH context: 55030124 C methylated in CpG context: 71.3% C methylated in CHG context: 7.9% C methylated in CHH context: 15.7%