CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 92734 39018 70.39 131752 2 101287 40719 71.33 142006 3 89692 39581 69.38 129273 4 86324 36381 70.35 122705 5 87175 36844 70.29 124019 6 87862 36640 70.57 124502 7 85931 35970 70.49 121901 8 88024 36515 70.68 124539 9 88614 35799 71.23 124413 10 91937 36111 71.80 128048 11 91873 36215 71.73 128088 12 93752 35905 72.31 129657 13 93521 35643 72.40 129164 14 94540 36626 72.08 131166 15 94760 36249 72.33 131009 16 94730 35835 72.55 130565 17 94845 36326 72.31 131171 18 96648 36790 72.43 133438 19 94411 35859 72.47 130270 20 96375 36196 72.70 132571 21 96583 36416 72.62 132999 22 96140 36493 72.49 132633 23 96633 36739 72.45 133372 24 97049 36718 72.55 133767 25 97436 36870 72.55 134306 26 97527 36745 72.63 134272 27 98373 36883 72.73 135256 28 97982 36973 72.60 134955 29 97166 36541 72.67 133707 30 99264 36884 72.91 136148 31 98244 36353 72.99 134597 32 98751 36686 72.91 135437 33 99944 37411 72.76 137355 34 98033 36703 72.76 134736 35 97609 36806 72.62 134415 36 97774 36799 72.65 134573 37 96854 36047 72.88 132901 38 97472 36572 72.72 134044 39 97867 36022 73.10 133889 40 96524 35297 73.22 131821 41 95257 35821 72.67 131078 42 96226 35816 72.88 132042 43 94274 35374 72.72 129648 44 93649 35610 72.45 129259 45 93803 35527 72.53 129330 46 92411 35233 72.40 127644 47 92475 35211 72.42 127686 48 91958 35269 72.28 127227 49 90162 34486 72.33 124648 50 88945 34206 72.22 123151 51 88458 34269 72.08 122727 52 86832 32995 72.46 119827 53 87339 32871 72.66 120210 54 86209 33138 72.23 119347 55 85144 32539 72.35 117683 56 84022 32666 72.01 116688 57 82628 32371 71.85 114999 58 81616 32159 71.73 113775 59 80028 31527 71.74 111555 60 79442 31339 71.71 110781 61 78005 30703 71.76 108708 62 76901 30495 71.61 107396 63 75767 30301 71.43 106068 64 74611 29562 71.62 104173 65 72815 29323 71.29 102138 66 72974 28826 71.68 101800 67 71587 28370 71.62 99957 68 70337 27955 71.56 98292 69 69164 27628 71.46 96792 70 68067 27608 71.14 95675 71 66470 27154 71.00 93624 72 65198 26842 70.84 92040 73 64170 26388 70.86 90558 74 62951 25792 70.94 88743 75 60824 25701 70.30 86525 76 58616 24615 70.43 83231 77 55160 23663 69.98 78823 78 49303 20533 70.60 69836 79 35827 15024 70.45 50851 80 11529 4538 71.76 16067 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 38862 166074 18.96 204936 2 26646 166032 13.83 192678 3 23523 162042 12.68 185565 4 22039 165909 11.73 187948 5 23765 163237 12.71 187002 6 23194 162462 12.49 185656 7 20002 170022 10.53 190024 8 20322 165890 10.91 186212 9 21731 168434 11.43 190165 10 20062 171289 10.48 191351 11 18786 170521 9.92 189307 12 18384 170576 9.73 188960 13 20732 176274 10.52 197006 14 18687 173808 9.71 192495 15 18085 174374 9.40 192459 16 18849 179984 9.48 198833 17 17720 180944 8.92 198664 18 17715 180145 8.95 197860 19 18491 184293 9.12 202784 20 17237 182712 8.62 199949 21 20292 183195 9.97 203487 22 18072 185876 8.86 203948 23 17093 183353 8.53 200446 24 16924 186596 8.32 203520 25 17463 189035 8.46 206498 26 16920 188049 8.25 204969 27 17718 189308 8.56 207026 28 16412 190854 7.92 207266 29 17455 189778 8.42 207233 30 16719 188922 8.13 205641 31 17134 192214 8.18 209348 32 16075 190122 7.80 206197 33 16856 189990 8.15 206846 34 16769 193525 7.97 210294 35 15664 189920 7.62 205584 36 16579 189311 8.05 205890 37 16756 191369 8.05 208125 38 15489 189955 7.54 205444 39 14897 188463 7.33 203360 40 15373 191243 7.44 206616 41 15342 187401 7.57 202743 42 14711 187011 7.29 201722 43 15468 186788 7.65 202256 44 14522 184785 7.29 199307 45 15437 183861 7.75 199298 46 14409 184195 7.26 198604 47 14818 181419 7.55 196237 48 14220 179432 7.34 193652 49 14413 180208 7.41 194621 50 14245 176365 7.47 190610 51 13290 174743 7.07 188033 52 13270 174744 7.06 188014 53 13593 172655 7.30 186248 54 13322 170735 7.24 184057 55 13057 169700 7.14 182757 56 12374 166700 6.91 179074 57 12158 165127 6.86 177285 58 12248 165103 6.91 177351 59 11631 161806 6.71 173437 60 11940 159541 6.96 171481 61 11966 158194 7.03 170160 62 11589 154139 6.99 165728 63 11430 152474 6.97 163904 64 10687 152140 6.56 162827 65 10640 148902 6.67 159542 66 10248 146783 6.53 157031 67 10118 144947 6.53 155065 68 10003 142432 6.56 152435 69 10000 139893 6.67 149893 70 9484 137962 6.43 147446 71 9421 134973 6.52 144394 72 9070 133699 6.35 142769 73 9603 132163 6.77 141766 74 9389 128997 6.78 138386 75 9158 126290 6.76 135448 76 9079 123984 6.82 133063 77 8743 114818 7.08 123561 78 8595 100888 7.85 109483 79 7240 72207 9.11 79447 80 3520 20577 14.61 24097 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 173395 549017 24.00 722412 2 161963 555831 22.56 717794 3 149426 544304 21.54 693730 4 146386 538684 21.37 685070 5 145382 538354 21.26 683736 6 146164 536299 21.42 682463 7 139880 528536 20.93 668416 8 135549 526968 20.46 662517 9 142883 530654 21.21 673537 10 144014 532223 21.30 676237 11 142443 541391 20.83 683834 12 146669 549684 21.06 696353 13 150650 550565 21.48 701215 14 141218 557188 20.22 698406 15 145390 564811 20.47 710201 16 151360 564011 21.16 715371 17 141232 567373 19.93 708605 18 143922 576032 19.99 719954 19 145450 572864 20.25 718314 20 142300 582126 19.64 724426 21 143272 584332 19.69 727604 22 143441 578469 19.87 721910 23 137166 578422 19.17 715588 24 139702 588184 19.19 727886 25 142087 584126 19.57 726213 26 136774 591108 18.79 727882 27 142119 593399 19.32 735518 28 142599 589814 19.47 732413 29 137657 590942 18.89 728599 30 138024 595877 18.81 733901 31 136580 592933 18.72 729513 32 130649 595159 18.00 725808 33 131509 594912 18.10 726421 34 131936 590313 18.27 722249 35 128202 592358 17.79 720560 36 129214 594563 17.85 723777 37 128645 589479 17.91 718124 38 127608 586958 17.86 714566 39 122120 586562 17.23 708682 40 123271 582784 17.46 706055 41 118065 578825 16.94 696890 42 116514 578298 16.77 694812 43 118218 570486 17.17 688704 44 111886 566386 16.50 678272 45 111936 562868 16.59 674804 46 108047 554908 16.30 662955 47 104890 550507 16.00 655397 48 103758 548116 15.92 651874 49 102682 538376 16.02 641058 50 98418 530051 15.66 628469 51 97301 529369 15.53 626670 52 96462 520990 15.62 617452 53 96221 516373 15.71 612594 54 90766 510714 15.09 601480 55 89579 503348 15.11 592927 56 84932 496020 14.62 580952 57 83388 492357 14.48 575745 58 81925 484690 14.46 566615 59 77502 477467 13.97 554969 60 77567 470356 14.16 547923 61 76326 462328 14.17 538654 62 69569 455132 13.26 524701 63 69279 450919 13.32 520198 64 67614 442640 13.25 510254 65 63607 435697 12.74 499304 66 62266 429294 12.67 491560 67 61128 422678 12.63 483806 68 60143 416600 12.62 476743 69 59169 409850 12.62 469019 70 56252 401447 12.29 457699 71 54318 395176 12.08 449494 72 53266 390427 12.01 443693 73 53608 382171 12.30 435779 74 50189 376555 11.76 426744 75 49584 369033 11.84 418617 76 49083 356985 12.09 406068 77 46118 334848 12.11 380966 78 42642 295604 12.61 338246 79 37090 214311 14.75 251401 80 19210 62262 23.58 81472 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 58694 42422 58.05 101116 2 54755 31914 63.18 86669 3 57823 28999 66.60 86822 4 48059 26907 64.11 74966 5 47058 25161 65.16 72219 6 46522 23557 66.39 70079 7 49324 25855 65.61 75179 8 46394 22231 67.61 68625 9 44798 21137 67.94 65935 10 45836 21430 68.14 67266 11 46248 21736 68.03 67984 12 43075 20174 68.10 63249 13 43823 19858 68.82 63681 14 44084 19741 69.07 63825 15 43634 19063 69.60 62697 16 42755 18317 70.01 61072 17 41438 18478 69.16 59916 18 39871 17309 69.73 57180 19 39764 17064 69.97 56828 20 38048 16954 69.18 55002 21 37633 16226 69.87 53859 22 37143 15964 69.94 53107 23 36750 15683 70.09 52433 24 36028 14914 70.72 50942 25 36258 14977 70.77 51235 26 34685 14633 70.33 49318 27 32913 13514 70.89 46427 28 33652 13665 71.12 47317 29 32525 13214 71.11 45739 30 31264 12561 71.34 43825 31 31712 12908 71.07 44620 32 30717 12267 71.46 42984 33 29803 11817 71.61 41620 34 30802 12495 71.14 43297 35 29036 11713 71.26 40749 36 28166 11049 71.82 39215 37 27412 11008 71.35 38420 38 27460 10970 71.45 38430 39 27025 10400 72.21 37425 40 27158 10498 72.12 37656 41 25389 9963 71.82 35352 42 24113 9615 71.49 33728 43 24390 9334 72.32 33724 44 23761 9068 72.38 32829 45 22705 8966 71.69 31671 46 22687 8953 71.70 31640 47 22226 9029 71.11 31255 48 21451 8348 71.99 29799 49 20882 8303 71.55 29185 50 20527 8102 71.70 28629 51 19188 7593 71.65 26781 52 19328 7677 71.57 27005 53 18497 7415 71.38 25912 54 18504 7271 71.79 25775 55 18213 7144 71.83 25357 56 17830 7109 71.49 24939 57 17614 7077 71.34 24691 58 16883 6857 71.12 23740 59 16189 6632 70.94 22821 60 15546 6357 70.98 21903 61 15458 6238 71.25 21696 62 14931 6070 71.10 21001 63 14452 5893 71.03 20345 64 14238 5686 71.46 19924 65 13671 5637 70.80 19308 66 13066 5328 71.03 18394 67 12757 5389 70.30 18146 68 12595 5317 70.32 17912 69 12156 5106 70.42 17262 70 12018 5106 70.18 17124 71 11637 5079 69.62 16716 72 11115 5006 68.95 16121 73 10894 4910 68.93 15804 74 10550 4910 68.24 15460 75 9950 4499 68.86 14449 76 9611 4401 68.59 14012 77 9146 4298 68.03 13444 78 8785 4328 66.99 13113 79 7858 3911 66.77 11769 80 5673 2833 66.69 8506 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11930 160070 6.94 172000 2 9933 138469 6.69 148402 3 10974 134912 7.52 145886 4 7228 123308 5.54 130536 5 7380 110506 6.26 117886 6 7200 109222 6.18 116422 7 7203 106597 6.33 113800 8 7590 111926 6.35 119516 9 6591 100506 6.15 107097 10 6665 97160 6.42 103825 11 6434 97554 6.19 103988 12 6461 98048 6.18 104509 13 6204 92212 6.30 98416 14 6206 90629 6.41 96835 15 6306 94876 6.23 101182 16 5848 88687 6.19 94535 17 5820 84702 6.43 90522 18 5813 86417 6.30 92230 19 5428 82131 6.20 87559 20 5395 80159 6.31 85554 21 5312 80512 6.19 85824 22 5025 76405 6.17 81430 23 5124 77076 6.23 82200 24 4896 76568 6.01 81464 25 5082 71982 6.59 77064 26 4993 69927 6.66 74920 27 4966 72299 6.43 77265 28 4940 68554 6.72 73494 29 4539 70067 6.08 74606 30 4226 66009 6.02 70235 31 4204 65213 6.06 69417 32 4190 63493 6.19 67683 33 4003 64372 5.85 68375 34 3829 59796 6.02 63625 35 3975 59064 6.31 63039 36 3728 58029 6.04 61757 37 3665 54799 6.27 58464 38 3769 54318 6.49 58087 39 3725 55037 6.34 58762 40 3656 52460 6.52 56116 41 3347 51681 6.08 55028 42 3117 51025 5.76 54142 43 3091 48779 5.96 51870 44 3114 46524 6.27 49638 45 2983 47736 5.88 50719 46 2858 45184 5.95 48042 47 2806 45025 5.87 47831 48 2759 43693 5.94 46452 49 2545 41822 5.74 44367 50 2631 40802 6.06 43433 51 2571 40830 5.92 43401 52 2557 38629 6.21 41186 53 2508 37288 6.30 39796 54 2580 37204 6.49 39784 55 2219 36265 5.77 38484 56 2134 35396 5.69 37530 57 2227 36161 5.80 38388 58 2090 33238 5.92 35328 59 1911 32769 5.51 34680 60 2011 32791 5.78 34802 61 1968 30986 5.97 32954 62 1841 30292 5.73 32133 63 1754 29766 5.56 31520 64 1860 28656 6.10 30516 65 1770 27681 6.01 29451 66 1856 27404 6.34 29260 67 1696 26375 6.04 28071 68 1710 25756 6.23 27466 69 1644 25045 6.16 26689 70 1603 24657 6.10 26260 71 1513 23848 5.97 25361 72 1479 23529 5.91 25008 73 1465 22567 6.10 24032 74 1439 21951 6.15 23390 75 1385 22019 5.92 23404 76 1358 20477 6.22 21835 77 1275 19754 6.06 21029 78 1191 19139 5.86 20330 79 1019 17162 5.60 18181 80 641 12366 4.93 13007 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 50002 525849 8.68 575851 2 38631 419917 8.42 458548 3 39917 396681 9.14 436598 4 34796 369583 8.60 404379 5 34324 338087 9.22 372411 6 32854 312801 9.50 345655 7 31803 307902 9.36 339705 8 31988 298200 9.69 330188 9 32473 300572 9.75 333045 10 32064 299921 9.66 331985 11 31635 279921 10.15 311556 12 30592 273785 10.05 304377 13 30567 275829 9.98 306396 14 30390 266933 10.22 297323 15 30116 265791 10.18 295907 16 29805 266319 10.07 296124 17 29088 256558 10.18 285646 18 28623 254524 10.11 283147 19 28422 251280 10.16 279702 20 27609 241600 10.26 269209 21 27234 237314 10.29 264548 22 26579 231018 10.32 257597 23 26422 227566 10.40 253988 24 25879 221220 10.47 247099 25 24943 218859 10.23 243802 26 24420 212161 10.32 236581 27 23878 209366 10.24 233244 28 24054 207932 10.37 231986 29 23585 200430 10.53 224015 30 23197 195834 10.59 219031 31 22997 199910 10.32 222907 32 22258 188018 10.59 210276 33 21533 183396 10.51 204929 34 21145 183002 10.36 204147 35 20727 178687 10.39 199414 36 19994 174728 10.27 194722 37 19353 172916 10.07 192269 38 18608 167246 10.01 185854 39 18354 163069 10.12 181423 40 18314 163314 10.08 181628 41 17673 157807 10.07 175480 42 17461 152932 10.25 170393 43 16974 151663 10.07 168637 44 16599 144628 10.30 161227 45 15957 139857 10.24 155814 46 15553 141234 9.92 156787 47 15356 136984 10.08 152340 48 15099 136064 9.99 151163 49 14553 134908 9.74 149461 50 13874 125702 9.94 139576 51 13493 123111 9.88 136604 52 13064 124682 9.48 137746 53 12549 115263 9.82 127812 54 12482 112180 10.01 124662 55 12375 111234 10.01 123609 56 11994 107839 10.01 119833 57 11830 107687 9.90 119517 58 11304 103074 9.88 114378 59 11187 102210 9.87 113397 60 10769 97766 9.92 108535 61 10442 95716 9.84 106158 62 10259 92537 9.98 102796 63 9985 90849 9.90 100834 64 9540 91451 9.45 100991 65 9296 86216 9.73 95512 66 8791 83603 9.51 92394 67 8764 82789 9.57 91553 68 8499 83526 9.24 92025 69 8653 79631 9.80 88284 70 8105 76750 9.55 84855 71 7900 75127 9.51 83027 72 7699 73756 9.45 81455 73 7359 70224 9.49 77583 74 7250 67638 9.68 74888 75 6914 65142 9.60 72056 76 6604 64303 9.31 70907 77 6180 61760 9.10 67940 78 5517 59276 8.51 64793 79 4556 54331 7.74 58887 80 2937 38564 7.08 41501