File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated CpHs	Unmethylated CpHs	Methylated CHHs	Unmethylated CHHs
zr2096_10_s1_R1_val_1_bismark_bt2_pe.bam	17448883	6101640	9119335	2227908	0	234688	5866952	97475823	9026043	3636169	1538925	18001224	10243338	55030124
zr2096_1_s1_R1_val_1_bismark_bt2_pe.bam	28603346	5210641	21591441	1801263	1	602416	4608225	72332983	6025223	2420764	1114246	12288170	8658535	41826045
zr2096_2_s1_R1_val_1_bismark_bt2_pe.bam	30325606	10644442	15589998	4091165	1	799246	9845196	136229712	11879226	4507158	2157657	24233929	17634457	75817285
zr2096_3_s1_R1_val_1_bismark_bt2_pe.bam	29548753	10380652	15079334	4088766	1	529782	9850870	160911412	16847360	4726865	2616555	29584213	17387198	89749221
zr2096_4_s1_R1_val_1_bismark_bt2_pe.bam	23970516	9089190	11418028	3463296	2	273122	8816068	126313155	9972224	4727011	1848398	22432587	14890081	72442854
zr2096_5_s1_R1_val_1_bismark_bt2_pe.bam	31503281	11081866	16450305	3971109	1	627908	10453958	161268048	12900369	5831349	2345195	28452905	17389225	94349005
zr2096_6_s1_R1_val_1_bismark_bt2_pe.bam	23909493	9156060	11217257	3536175	1	306451	8849609	130205684	11634357	4045934	1936357	23280878	14566048	74742110
zr2096_7_s1_R1_val_1_bismark_bt2_pe.bam	29273635	9890720	15885567	3497343	5	379722	9510998	155753265	13485481	4922686	2435141	28205376	16681466	90023115
zr2096_8_s1_R1_val_1_bismark_bt2_pe.bam	29483218	9407790	16770677	3304746	5	526486	8881304	138668831	10553263	4900827	2096807	24826006	15783174	80508754
zr2096_9_s1_R1_val_1_bismark_bt2_pe.bam	31847541	11022653	16603362	4221524	2	1419260	9603393	158911121	16104320	4779650	2309337	29739238	14720410	91258166