Total number of alignments analysed in /gscratch/srlab/sr320/analyses/1002/20150414_trimmed_2112_lane1_NB6_NoOil_GCCAAT_bismark_bt2.bam:	1614710
Total number duplicated alignments removed:	216713 (13.42%)
Duplicated alignments were found at:	145753 different position(s)

Total count of deduplicated leftover sequences: 1397997 (86.58% of total)