/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-227_S35_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-227_S35_L004_R2_001_val_2.fq.gz
Data processed at 02:53 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
13531234
Paired-end alignments with a unique best hit
5777321
Pairs without alignments under any condition
6365101
Pairs that did not map uniquely
1388812
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
170387967
Methylated C's in CpG context
7151061
Methylated C's in CHG context
914187
Methylated C's in CHH context
3215757
Methylated C's in Unknown context
47223
Unmethylated C's in CpG context
16695256
Unmethylated C's in CHG context
35577795
Unmethylated C's in CHH context
106833911
Unmethylated C's in Unknown context
363445
Percentage methylation (CpG context)
30.0%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2853863
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
2923455
original bottom strand
Deduplication
Alignments analysed
5777318
Unique alignments
4209352
Duplicates removed
1567966
Duplicated alignments were found at 1031120 different positions
