EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4362357 lines in total Total number of methylation call strings processed: 8724714 Final Cytosine Methylation Report ================================= Total number of C's analysed: 89710026 Total methylated C's in CpG context: 3860035 Total methylated C's in CHG context: 483168 Total methylated C's in CHH context: 1807632 Total C to T conversions in CpG context: 8426280 Total C to T conversions in CHG context: 18264364 Total C to T conversions in CHH context: 56868547 C methylated in CpG context: 31.4% C methylated in CHG context: 2.6% C methylated in CHH context: 3.1%