CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 118480 163659 41.99 282139 2 114664 181957 38.66 296621 3 110623 157607 41.24 268230 4 118022 122240 49.12 240262 5 113946 103983 52.29 217929 6 116853 87088 57.30 203941 7 128657 88779 59.17 217436 8 62282 97112 39.07 159394 9 55333 89561 38.19 144894 10 55498 88101 38.65 143599 11 57862 91240 38.81 149102 12 56120 93199 37.58 149319 13 54867 96245 36.31 151112 14 52368 96559 35.16 148927 15 51234 97870 34.36 149104 16 47688 97216 32.91 144904 17 45217 94437 32.38 139654 18 45925 96592 32.22 142517 19 45124 97209 31.70 142333 20 45813 98222 31.81 144035 21 45525 98909 31.52 144434 22 45063 97432 31.62 142495 23 44884 97517 31.52 142401 24 44789 97383 31.50 142172 25 43958 96768 31.24 140726 26 44136 95057 31.71 139193 27 44041 98393 30.92 142434 28 44729 96946 31.57 141675 29 44052 98127 30.98 142179 30 43489 97081 30.94 140570 31 43977 94780 31.69 138757 32 43115 93319 31.60 136434 33 43084 93379 31.57 136463 34 44306 92498 32.39 136804 35 43327 92115 31.99 135442 36 43141 93090 31.67 136231 37 41546 91278 31.28 132824 38 40775 90287 31.11 131062 39 42329 92197 31.47 134526 40 41958 90423 31.69 132381 41 41520 90255 31.51 131775 42 41943 91590 31.41 133533 43 41505 88500 31.93 130005 44 40865 88175 31.67 129040 45 41060 88058 31.80 129118 46 41679 88909 31.92 130588 47 40935 86560 32.11 127495 48 40100 86482 31.68 126582 49 41489 86640 32.38 128129 50 39528 87513 31.11 127041 51 39899 86620 31.54 126519 52 40456 89827 31.05 130283 53 38977 84914 31.46 123891 54 38233 83377 31.44 121610 55 37488 81093 31.61 118581 56 37312 80260 31.74 117572 57 37924 81112 31.86 119036 58 37478 80914 31.66 118392 59 37664 79443 32.16 117107 60 36121 78919 31.40 115040 61 36303 78327 31.67 114630 62 35411 78522 31.08 113933 63 35154 77117 31.31 112271 64 34343 76727 30.92 111070 65 35078 75568 31.70 110646 66 35097 75798 31.65 110895 67 34610 74131 31.83 108741 68 34002 73674 31.58 107676 69 33579 73602 31.33 107181 70 33318 72473 31.49 105791 71 32283 71383 31.14 103666 72 32173 70040 31.48 102213 73 31684 69933 31.18 101617 74 31824 68924 31.59 100748 75 30353 68529 30.70 98882 76 30620 67252 31.29 97872 77 31070 66982 31.69 98052 78 30892 66878 31.60 97770 79 30034 66119 31.24 96153 80 29383 66124 30.77 95507 81 29311 64868 31.12 94179 82 28301 63925 30.69 92226 83 28791 64300 30.93 93091 84 28836 63848 31.11 92684 85 28541 62694 31.28 91235 86 27572 62166 30.72 89738 87 26843 60981 30.56 87824 88 27125 61046 30.76 88171 89 26453 59840 30.65 86293 90 26469 59802 30.68 86271 91 25896 58436 30.71 84332 92 25724 58822 30.43 84546 93 25718 58189 30.65 83907 94 25778 57392 30.99 83170 95 25328 56620 30.91 81948 96 25045 57917 30.19 82962 97 24458 55770 30.49 80228 98 23027 52040 30.68 75067 99 18102 40948 30.66 59050 100 23938 51885 31.57 75823 101 22510 51673 30.34 74183 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 153842 205705 42.79 359547 2 92022 197213 31.82 289235 3 38870 192644 16.79 231514 4 20537 189737 9.77 210274 5 12890 174445 6.88 187335 6 12559 169364 6.90 181923 7 8376 209418 3.85 217794 8 3761 225360 1.64 229121 9 3142 214882 1.44 218024 10 3081 209266 1.45 212347 11 3160 212574 1.46 215734 12 2990 213256 1.38 216246 13 2837 206237 1.36 209074 14 2638 206046 1.26 208684 15 2530 211488 1.18 214018 16 2217 210301 1.04 212518 17 2143 208899 1.02 211042 18 2073 208495 0.98 210568 19 2149 207164 1.03 209313 20 2202 218317 1.00 220519 21 2031 219971 0.91 222002 22 2360 217668 1.07 220028 23 2314 220230 1.04 222544 24 2331 220622 1.05 222953 25 2252 214641 1.04 216893 26 2608 216663 1.19 219271 27 2351 218375 1.07 220726 28 2275 217555 1.03 219830 29 2603 218700 1.18 221303 30 2381 222332 1.06 224713 31 2488 215172 1.14 217660 32 2426 216809 1.11 219235 33 2536 216649 1.16 219185 34 2496 214096 1.15 216592 35 2735 213414 1.27 216149 36 2494 213090 1.16 215584 37 2441 207189 1.16 209630 38 2595 210406 1.22 213001 39 2451 207770 1.17 210221 40 2517 207144 1.20 209661 41 2468 206522 1.18 208990 42 2326 205851 1.12 208177 43 2477 202414 1.21 204891 44 2487 204506 1.20 206993 45 2489 203420 1.21 205909 46 2549 200305 1.26 202854 47 2511 200085 1.24 202596 48 2476 202900 1.21 205376 49 2450 197104 1.23 199554 50 2655 196055 1.34 198710 51 2482 197757 1.24 200239 52 2531 195992 1.27 198523 53 2564 193153 1.31 195717 54 2579 194382 1.31 196961 55 2437 190835 1.26 193272 56 2589 191450 1.33 194039 57 2471 189052 1.29 191523 58 2522 187814 1.33 190336 59 2584 187734 1.36 190318 60 2398 186668 1.27 189066 61 2491 184189 1.33 186680 62 2547 184040 1.37 186587 63 2452 182206 1.33 184658 64 2512 181780 1.36 184292 65 2593 179981 1.42 182574 66 2414 176578 1.35 178992 67 2391 171505 1.37 173896 68 2558 173280 1.45 175838 69 2326 172126 1.33 174452 70 2322 167307 1.37 169629 71 2354 166455 1.39 168809 72 2242 165909 1.33 168151 73 2253 164089 1.35 166342 74 2306 162243 1.40 164549 75 2208 162119 1.34 164327 76 2136 156868 1.34 159004 77 2257 157449 1.41 159706 78 2179 154620 1.39 156799 79 2223 152904 1.43 155127 80 2077 151242 1.35 153319 81 2057 148961 1.36 151018 82 2030 147169 1.36 149199 83 2181 149311 1.44 151492 84 2019 148123 1.34 150142 85 2134 146697 1.43 148831 86 2110 147452 1.41 149562 87 2036 146782 1.37 148818 88 2003 143668 1.38 145671 89 2024 141163 1.41 143187 90 1939 140717 1.36 142656 91 2096 138615 1.49 140711 92 2119 138721 1.50 140840 93 2165 136626 1.56 138791 94 2058 134075 1.51 136133 95 2028 132335 1.51 134363 96 2086 131683 1.56 133769 97 1942 120258 1.59 122200 98 1865 110663 1.66 112528 99 1134 71390 1.56 72524 100 1312 71685 1.80 72997 101 2784 120719 2.25 123503 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 168937 275744 37.99 444681 2 85854 298043 22.36 383897 3 44341 353313 11.15 397654 4 38018 374978 9.21 412996 5 35868 447513 7.42 483381 6 28973 481052 5.68 510025 7 24492 609495 3.86 633987 8 15492 652724 2.32 668216 9 11845 604834 1.92 616679 10 11644 592852 1.93 604496 11 13282 592715 2.19 605997 12 11436 598252 1.88 609688 13 12411 609973 1.99 622384 14 13428 625492 2.10 638920 15 11564 640479 1.77 652043 16 11246 648531 1.70 659777 17 12753 651110 1.92 663863 18 10980 671697 1.61 682677 19 10996 683127 1.58 694123 20 12806 705143 1.78 717949 21 11269 705717 1.57 716986 22 11752 704385 1.64 716137 23 13069 704661 1.82 717730 24 11187 704103 1.56 715290 25 11918 706475 1.66 718393 26 13169 708951 1.82 722120 27 11427 709708 1.58 721135 28 11316 710263 1.57 721579 29 13243 705651 1.84 718894 30 11299 697570 1.59 708869 31 11608 687405 1.66 699013 32 12587 687753 1.80 700340 33 11324 684038 1.63 695362 34 12675 686044 1.81 698719 35 13010 677961 1.88 690971 36 11326 682575 1.63 693901 37 11014 675003 1.61 686017 38 12923 674896 1.88 687819 39 11017 668100 1.62 679117 40 11425 663373 1.69 674798 41 12582 664545 1.86 677127 42 11514 667158 1.70 678672 43 11567 656265 1.73 667832 44 12625 658277 1.88 670902 45 11219 649656 1.70 660875 46 11067 647772 1.68 658839 47 12186 639906 1.87 652092 48 10696 639075 1.65 649771 49 11006 628133 1.72 639139 50 11820 625489 1.85 637309 51 10284 615509 1.64 625793 52 11198 609947 1.80 621145 53 11908 603270 1.94 615178 54 10459 600613 1.71 611072 55 10737 597568 1.77 608305 56 12091 594237 1.99 606328 57 10025 601220 1.64 611245 58 10553 593488 1.75 604041 59 11767 594766 1.94 606533 60 9892 585239 1.66 595131 61 10798 579148 1.83 589946 62 11195 571092 1.92 582287 63 10099 565184 1.76 575283 64 10771 560016 1.89 570787 65 11222 556312 1.98 567534 66 9462 550650 1.69 560112 67 9760 546600 1.75 556360 68 10925 543913 1.97 554838 69 9154 538325 1.67 547479 70 9617 534398 1.77 544015 71 10514 529452 1.95 539966 72 9171 526994 1.71 536165 73 10006 517794 1.90 527800 74 10240 516478 1.94 526718 75 9036 511590 1.74 520626 76 9068 507772 1.75 516840 77 10113 504146 1.97 514259 78 8579 496624 1.70 505203 79 8730 495519 1.73 504249 80 9933 490252 1.99 500185 81 8719 483522 1.77 492241 82 9184 476288 1.89 485472 83 10048 477362 2.06 487410 84 8622 470888 1.80 479510 85 8477 465181 1.79 473658 86 9225 459185 1.97 468410 87 8408 455236 1.81 463644 88 8271 453052 1.79 461323 89 9206 446254 2.02 455460 90 7978 443905 1.77 451883 91 8201 436774 1.84 444975 92 8708 436631 1.96 445339 93 7820 431734 1.78 439554 94 8033 425523 1.85 433556 95 8915 419732 2.08 428647 96 7457 411689 1.78 419146 97 7459 401150 1.83 408609 98 7710 372210 2.03 379920 99 4716 255899 1.81 260615 100 5193 226725 2.24 231918 101 8065 377265 2.09 385330 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 87900 79120 52.63 167020 2 72420 62270 53.77 134690 3 77575 71690 51.97 149265 4 68951 77485 47.09 146436 5 31177 98718 24.00 129895 6 19626 55027 26.29 74653 7 16450 58319 22.00 74769 8 17154 52730 24.55 69884 9 14999 46013 24.58 61012 10 16224 50528 24.30 66752 11 17444 49675 25.99 67119 12 17081 47823 26.32 64904 13 17310 45815 27.42 63125 14 17886 47099 27.52 64985 15 17921 43582 29.14 61503 16 16232 41605 28.07 57837 17 19815 45462 30.36 65277 18 19212 44299 30.25 63511 19 18518 42444 30.38 60962 20 16650 41313 28.73 57963 21 17678 39764 30.78 57442 22 18033 41161 30.46 59194 23 16848 39537 29.88 56385 24 15406 37432 29.16 52838 25 17375 39921 30.32 57296 26 15785 37503 29.62 53288 27 17081 38261 30.86 55342 28 15720 36321 30.21 52041 29 16495 37838 30.36 54333 30 15614 35443 30.58 51057 31 15069 35436 29.84 50505 32 14749 33819 30.37 48568 33 16787 34562 32.69 51349 34 15739 36398 30.19 52137 35 19364 39957 32.64 59321 36 16054 34512 31.75 50566 37 16351 35699 31.41 52050 38 14485 33488 30.19 47973 39 15225 33527 31.23 48752 40 16722 33269 33.45 49991 41 14358 32594 30.58 46952 42 14855 34119 30.33 48974 43 14452 32716 30.64 47168 44 13636 31789 30.02 45425 45 17501 36395 32.47 53896 46 13462 29444 31.38 42906 47 13535 29681 31.32 43216 48 13780 30158 31.36 43938 49 13082 30343 30.13 43425 50 12549 29116 30.12 41665 51 12788 28338 31.09 41126 52 12414 28830 30.10 41244 53 12813 27953 31.43 40766 54 12576 28310 30.76 40886 55 12972 28082 31.60 41054 56 11806 27660 29.91 39466 57 12276 27587 30.80 39863 58 12168 27330 30.81 39498 59 11467 25549 30.98 37016 60 11751 26713 30.55 38464 61 10907 25108 30.28 36015 62 10699 24719 30.21 35418 63 11892 25269 32.00 37161 64 11004 24628 30.88 35632 65 10874 23236 31.88 34110 66 11441 24035 32.25 35476 67 10345 25025 29.25 35370 68 12017 26009 31.60 38026 69 10522 22867 31.51 33389 70 9941 22831 30.33 32772 71 10466 21923 32.31 32389 72 9579 21660 30.66 31239 73 9934 22275 30.84 32209 74 8867 20955 29.73 29822 75 9043 21107 29.99 30150 76 9511 20568 31.62 30079 77 9043 20585 30.52 29628 78 9023 20630 30.43 29653 79 8745 20289 30.12 29034 80 8430 19963 29.69 28393 81 8643 19872 30.31 28515 82 8602 19859 30.22 28461 83 8723 19246 31.19 27969 84 9817 21031 31.82 30848 85 8064 19215 29.56 27279 86 7951 18609 29.94 26560 87 8050 18248 30.61 26298 88 8126 18256 30.80 26382 89 8633 18959 31.29 27592 90 8334 18487 31.07 26821 91 7811 17702 30.62 25513 92 7452 17416 29.97 24868 93 7699 17248 30.86 24947 94 7863 17563 30.93 25426 95 7863 17186 31.39 25049 96 7377 17331 29.86 24708 97 8397 18371 31.37 26768 98 7362 15989 31.53 23351 99 6573 0 100.00 6573 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20423 100482 16.89 120905 2 19641 98179 16.67 117820 3 17928 98445 15.41 116373 4 19547 108490 15.27 128037 5 2069 195689 1.05 197758 6 1625 243595 0.66 245220 7 1070 134567 0.79 135637 8 1040 143299 0.72 144339 9 850 118476 0.71 119326 10 893 113555 0.78 114448 11 1312 159597 0.82 160909 12 1005 122161 0.82 123166 13 1009 121501 0.82 122510 14 1020 113788 0.89 114808 15 900 110011 0.81 110911 16 876 103173 0.84 104049 17 998 110065 0.90 111063 18 1111 97592 1.13 98703 19 877 95744 0.91 96621 20 788 94584 0.83 95372 21 1039 90324 1.14 91363 22 914 99351 0.91 100265 23 898 98896 0.90 99794 24 747 88226 0.84 88973 25 831 89457 0.92 90288 26 884 93735 0.93 94619 27 790 88062 0.89 88852 28 776 84581 0.91 85357 29 841 90160 0.92 91001 30 824 87791 0.93 88615 31 762 82132 0.92 82894 32 737 83970 0.87 84707 33 854 104048 0.81 104902 34 731 82936 0.87 83667 35 809 86417 0.93 87226 36 734 88130 0.83 88864 37 742 78664 0.93 79406 38 725 84117 0.85 84842 39 709 76935 0.91 77644 40 699 77698 0.89 78397 41 652 74422 0.87 75074 42 670 71372 0.93 72042 43 641 73436 0.87 74077 44 628 72060 0.86 72688 45 629 68257 0.91 68886 46 585 68540 0.85 69125 47 679 70188 0.96 70867 48 676 67446 0.99 68122 49 672 70701 0.94 71373 50 645 67696 0.94 68341 51 600 64711 0.92 65311 52 608 63409 0.95 64017 53 637 71423 0.88 72060 54 619 65390 0.94 66009 55 592 63533 0.92 64125 56 574 64509 0.88 65083 57 635 61449 1.02 62084 58 563 59478 0.94 60041 59 565 61687 0.91 62252 60 658 60080 1.08 60738 61 585 60187 0.96 60772 62 561 61767 0.90 62328 63 572 60172 0.94 60744 64 487 56818 0.85 57305 65 596 58522 1.01 59118 66 471 54507 0.86 54978 67 532 59700 0.88 60232 68 463 56567 0.81 57030 69 553 56302 0.97 56855 70 474 56088 0.84 56562 71 526 57102 0.91 57628 72 471 53357 0.88 53828 73 444 52112 0.84 52556 74 468 53570 0.87 54038 75 430 51971 0.82 52401 76 434 50074 0.86 50508 77 432 52876 0.81 53308 78 455 49147 0.92 49602 79 408 49141 0.82 49549 80 426 48191 0.88 48617 81 422 47043 0.89 47465 82 416 46397 0.89 46813 83 371 46446 0.79 46817 84 398 45283 0.87 45681 85 398 50954 0.78 51352 86 419 45041 0.92 45460 87 387 44906 0.85 45293 88 365 42679 0.85 43044 89 425 44657 0.94 45082 90 476 44725 1.05 45201 91 435 46730 0.92 47165 92 400 43529 0.91 43929 93 344 41520 0.82 41864 94 372 41081 0.90 41453 95 396 42429 0.92 42825 96 409 40195 1.01 40604 97 390 39988 0.97 40378 98 309 40210 0.76 40519 99 247 0 100.00 247 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 26210 124414 17.40 150624 2 21932 100602 17.90 122534 3 22316 105106 17.51 127422 4 21818 102603 17.54 124421 5 4707 216255 2.13 220962 6 4804 291498 1.62 296302 7 5269 403272 1.29 408541 8 5309 392378 1.33 397687 9 5554 367468 1.49 373022 10 5382 380266 1.40 385648 11 5367 373207 1.42 378574 12 5357 350816 1.50 356173 13 5197 362578 1.41 367775 14 5032 361484 1.37 366516 15 5104 373600 1.35 378704 16 4948 363714 1.34 368662 17 5039 359337 1.38 364376 18 4961 356049 1.37 361010 19 4537 327143 1.37 331680 20 4822 351588 1.35 356410 21 4689 331327 1.40 336016 22 4796 317671 1.49 322467 23 4430 313751 1.39 318181 24 4284 301419 1.40 305703 25 4679 300501 1.53 305180 26 4403 300179 1.45 304582 27 4779 325083 1.45 329862 28 4249 303960 1.38 308209 29 4283 296685 1.42 300968 30 4440 288322 1.52 292762 31 4165 283688 1.45 287853 32 4035 274585 1.45 278620 33 4066 273912 1.46 277978 34 4187 272825 1.51 277012 35 4586 283239 1.59 287825 36 3974 277869 1.41 281843 37 4038 276598 1.44 280636 38 4123 294498 1.38 298621 39 4119 264347 1.53 268466 40 4042 280519 1.42 284561 41 3848 260265 1.46 264113 42 3927 271136 1.43 275063 43 3981 253686 1.55 257667 44 3722 250104 1.47 253826 45 3890 252708 1.52 256598 46 3687 256066 1.42 259753 47 3570 247563 1.42 251133 48 3675 242681 1.49 246356 49 3505 252681 1.37 256186 50 3440 243289 1.39 246729 51 3555 237313 1.48 240868 52 3340 226562 1.45 229902 53 3246 225910 1.42 229156 54 3019 222459 1.34 225478 55 3283 233158 1.39 236441 56 3179 220483 1.42 223662 57 3181 231723 1.35 234904 58 3022 220713 1.35 223735 59 2962 210681 1.39 213643 60 3179 219855 1.43 223034 61 3175 209060 1.50 212235 62 2908 206508 1.39 209416 63 3015 209315 1.42 212330 64 2898 200832 1.42 203730 65 2733 205760 1.31 208493 66 2845 197228 1.42 200073 67 2685 198493 1.33 201178 68 2810 206542 1.34 209352 69 2813 199385 1.39 202198 70 2615 190194 1.36 192809 71 2585 188287 1.35 190872 72 2655 186971 1.40 189626 73 2601 186414 1.38 189015 74 2460 186871 1.30 189331 75 2465 184206 1.32 186671 76 2477 177244 1.38 179721 77 2526 176483 1.41 179009 78 2566 178498 1.42 181064 79 2391 181958 1.30 184349 80 2424 173907 1.37 176331 81 2448 175026 1.38 177474 82 2413 171186 1.39 173599 83 2448 170353 1.42 172801 84 2403 168251 1.41 170654 85 2286 167215 1.35 169501 86 2158 165847 1.28 168005 87 2301 164989 1.38 167290 88 2107 157914 1.32 160021 89 2140 158597 1.33 160737 90 2256 158200 1.41 160456 91 2197 157218 1.38 159415 92 2129 155546 1.35 157675 93 2049 153300 1.32 155349 94 2083 152741 1.35 154824 95 1984 149011 1.31 150995 96 1945 145811 1.32 147756 97 1901 146987 1.28 148888 98 1555 141480 1.09 143035 99 1183 0 100.00 1183