/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-214_S30_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-214_S30_L004_R2_001_val_2.fq.gz
Data processed at 02:53 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
28660043
Paired-end alignments with a unique best hit
11468074
Pairs without alignments under any condition
14622941
Pairs that did not map uniquely
2569028
Genomic sequence context not extractable (edges of chromosomes)
6
Cytosine Methylation
Total C's analysed
344103876
Methylated C's in CpG context
13048066
Methylated C's in CHG context
1676923
Methylated C's in CHH context
4069143
Methylated C's in Unknown context
63794
Unmethylated C's in CpG context
35864648
Unmethylated C's in CHG context
72383593
Unmethylated C's in CHH context
217061503
Unmethylated C's in Unknown context
751976
Percentage methylation (CpG context)
26.7%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5665121
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5802947
original bottom strand
Deduplication
Alignments analysed
11468068
Unique alignments
8703878
Duplicates removed
2764190
Duplicated alignments were found at 1689980 different positions