EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8641341 lines in total Total number of methylation call strings processed: 17282682 Final Cytosine Methylation Report ================================= Total number of C's analysed: 158634154 Total methylated C's in CpG context: 6281105 Total methylated C's in CHG context: 854946 Total methylated C's in CHH context: 1753269 Total C to T conversions in CpG context: 16254051 Total C to T conversions in CHG context: 33112776 Total C to T conversions in CHH context: 100378007 C methylated in CpG context: 27.9% C methylated in CHG context: 2.5% C methylated in CHH context: 1.7%