/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-205_S26_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-205_S26_L004_R2_001_val_2.fq.gz
Data processed at 02:53 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
16541499
Paired-end alignments with a unique best hit
6323593
Pairs without alignments under any condition
8364655
Pairs that did not map uniquely
1853251
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
172098082
Methylated C's in CpG context
7352466
Methylated C's in CHG context
973752
Methylated C's in CHH context
2227658
Methylated C's in Unknown context
41273
Unmethylated C's in CpG context
18563469
Unmethylated C's in CHG context
36797171
Unmethylated C's in CHH context
106183566
Unmethylated C's in Unknown context
362805
Percentage methylation (CpG context)
28.4%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
2.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3111821
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3211769
original bottom strand
Deduplication
Alignments analysed
6323590
Unique alignments
4719915
Duplicates removed
1603675
Duplicated alignments were found at 963679 different positions
