CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 78757 91776 46.18 170533 2 75368 100167 42.94 175535 3 75281 91000 45.27 166281 4 78404 80243 49.42 158647 5 77065 71026 52.04 148091 6 76158 58736 56.46 134894 7 85343 59345 58.98 144688 8 40746 65956 38.19 106702 9 35964 61852 36.77 97816 10 35756 61188 36.88 96944 11 37396 64140 36.83 101536 12 36566 63774 36.44 100340 13 35841 64897 35.58 100738 14 34248 65636 34.29 99884 15 34115 66790 33.81 100905 16 31516 65969 32.33 97485 17 30682 64724 32.16 95406 18 31341 66397 32.07 97738 19 30689 65301 31.97 95990 20 31164 66589 31.88 97753 21 31289 67102 31.80 98391 22 30603 65791 31.75 96394 23 30575 65548 31.81 96123 24 30253 66132 31.39 96385 25 29994 65113 31.54 95107 26 30009 65228 31.51 95237 27 29725 66382 30.93 96107 28 30771 66133 31.75 96904 29 29970 66022 31.22 95992 30 29230 65913 30.72 95143 31 29891 64796 31.57 94687 32 28944 63756 31.22 92700 33 29603 64407 31.49 94010 34 30128 64019 32.00 94147 35 29538 63868 31.62 93406 36 29181 64949 31.00 94130 37 28206 62625 31.05 90831 38 27731 62224 30.83 89955 39 28948 63516 31.31 92464 40 28679 62131 31.58 90810 41 28414 62652 31.20 91066 42 28598 63094 31.19 91692 43 28360 62095 31.35 90455 44 28026 61660 31.25 89686 45 28613 61803 31.65 90416 46 28608 61673 31.69 90281 47 27762 60103 31.60 87865 48 27624 60408 31.38 88032 49 28835 60259 32.36 89094 50 27316 60171 31.22 87487 51 27430 60375 31.24 87805 52 27585 61769 30.87 89354 53 26481 58680 31.10 85161 54 26514 58290 31.27 84804 55 26496 57075 31.70 83571 56 26016 56360 31.58 82376 57 25990 56681 31.44 82671 58 26071 56433 31.60 82504 59 26121 56469 31.63 82590 60 25661 55775 31.51 81436 61 25534 55433 31.54 80967 62 24882 54671 31.28 79553 63 24374 54306 30.98 78680 64 24629 53589 31.49 78218 65 24294 53435 31.25 77729 66 24876 53723 31.65 78599 67 24275 52544 31.60 76819 68 23849 51939 31.47 75788 69 23281 51835 30.99 75116 70 23181 51169 31.18 74350 71 22601 50264 31.02 72865 72 22183 49900 30.77 72083 73 21998 48960 31.00 70958 74 22206 48906 31.23 71112 75 21193 48741 30.30 69934 76 21228 47908 30.70 69136 77 21564 47606 31.18 69170 78 21421 47849 30.92 69270 79 21311 46573 31.39 67884 80 20559 46357 30.72 66916 81 20175 46008 30.48 66183 82 19605 45623 30.06 65228 83 19950 45515 30.47 65465 84 19972 45261 30.62 65233 85 19741 44883 30.55 64624 86 19400 43772 30.71 63172 87 18621 43399 30.02 62020 88 18527 42555 30.33 61082 89 18382 42570 30.16 60952 90 18031 42471 29.80 60502 91 18059 41953 30.09 60012 92 17880 41541 30.09 59421 93 17833 41541 30.04 59374 94 17439 41300 29.69 58739 95 17252 40561 29.84 57813 96 17151 40541 29.73 57692 97 16687 39237 29.84 55924 98 15852 36824 30.09 52676 99 12213 28774 29.80 40987 100 16155 36711 30.56 52866 101 14828 36450 28.92 51278 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 87676 139057 38.67 226733 2 51171 131640 27.99 182811 3 24835 128747 16.17 153582 4 15330 131784 10.42 147114 5 9933 117611 7.79 127544 6 9045 112332 7.45 121377 7 5569 139952 3.83 145521 8 2719 150768 1.77 153487 9 2171 146398 1.46 148569 10 2189 142439 1.51 144628 11 2430 144091 1.66 146521 12 2257 142394 1.56 144651 13 1960 139920 1.38 141880 14 1836 140835 1.29 142671 15 1856 143559 1.28 145415 16 1646 142405 1.14 144051 17 1667 141614 1.16 143281 18 1613 141241 1.13 142854 19 1644 140711 1.15 142355 20 1683 148581 1.12 150264 21 1606 148801 1.07 150407 22 1724 146543 1.16 148267 23 1827 148604 1.21 150431 24 1721 150540 1.13 152261 25 1989 145346 1.35 147335 26 2191 147668 1.46 149859 27 1747 148872 1.16 150619 28 1771 148388 1.18 150159 29 2020 149728 1.33 151748 30 1738 150736 1.14 152474 31 1769 146619 1.19 148388 32 1933 147176 1.30 149109 33 1776 148856 1.18 150632 34 1797 146955 1.21 148752 35 2188 145745 1.48 147933 36 1812 146889 1.22 148701 37 1832 142582 1.27 144414 38 2042 146236 1.38 148278 39 1745 144638 1.19 146383 40 1733 143609 1.19 145342 41 1749 142717 1.21 144466 42 1786 143566 1.23 145352 43 1881 140073 1.33 141954 44 1829 141887 1.27 143716 45 1849 140599 1.30 142448 46 1821 139298 1.29 141119 47 1957 138697 1.39 140654 48 1950 141725 1.36 143675 49 1796 136704 1.30 138500 50 1907 136059 1.38 137966 51 1857 137406 1.33 139263 52 1906 137494 1.37 139400 53 1957 134297 1.44 136254 54 1977 135777 1.44 137754 55 1959 132483 1.46 134442 56 1942 133095 1.44 135037 57 1943 132699 1.44 134642 58 1921 131357 1.44 133278 59 1967 130435 1.49 132402 60 1839 131192 1.38 133031 61 1918 127851 1.48 129769 62 1940 128788 1.48 130728 63 1824 126918 1.42 128742 64 1910 125712 1.50 127622 65 2273 125531 1.78 127804 66 1814 122613 1.46 124427 67 1831 119387 1.51 121218 68 2108 120375 1.72 122483 69 1786 119474 1.47 121260 70 1736 116583 1.47 118319 71 1769 116409 1.50 118178 72 1741 115983 1.48 117724 73 1729 114241 1.49 115970 74 1990 112750 1.73 114740 75 1613 113795 1.40 115408 76 1806 109789 1.62 111595 77 1979 109949 1.77 111928 78 1588 109148 1.43 110736 79 1700 105390 1.59 107090 80 1598 105664 1.49 107262 81 1644 104082 1.55 105726 82 1564 103088 1.49 104652 83 1739 104442 1.64 106181 84 1694 103853 1.60 105547 85 1597 101793 1.54 103390 86 1628 101952 1.57 103580 87 1811 102121 1.74 103932 88 1946 98346 1.94 100292 89 1694 98604 1.69 100298 90 1576 97991 1.58 99567 91 1487 96834 1.51 98321 92 1616 96811 1.64 98427 93 1678 95631 1.72 97309 94 1563 94154 1.63 95717 95 1597 92227 1.70 93824 96 1551 91985 1.66 93536 97 1534 83891 1.80 85425 98 1349 76902 1.72 78251 99 882 50423 1.72 51305 100 1069 50802 2.06 51871 101 2061 83526 2.41 85587 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 116092 199944 36.73 316036 2 67313 213495 23.97 280808 3 39689 241499 14.11 281188 4 35129 255879 12.07 291008 5 35125 295642 10.62 330767 6 27814 318973 8.02 346787 7 21132 406344 4.94 427476 8 16692 438481 3.67 455173 9 11809 409816 2.80 421625 10 11831 399972 2.87 411803 11 15108 402839 3.61 417947 12 12107 407140 2.89 419247 13 13763 415432 3.21 429195 14 15638 427427 3.53 443065 15 12919 434972 2.88 447891 16 12443 439364 2.75 451807 17 15616 440613 3.42 456229 18 12384 455712 2.65 468096 19 12447 462208 2.62 474655 20 15273 476508 3.11 491781 21 12165 476044 2.49 488209 22 13900 475314 2.84 489214 23 15725 476803 3.19 492528 24 12688 477726 2.59 490414 25 14042 473851 2.88 487893 26 16189 480193 3.26 496382 27 12735 479909 2.59 492644 28 12642 483255 2.55 495897 29 15733 481392 3.16 497125 30 12537 472899 2.58 485436 31 13368 468816 2.77 482184 32 15085 467522 3.13 482607 33 12280 468200 2.56 480480 34 14082 469257 2.91 483339 35 15321 463777 3.20 479098 36 12318 467360 2.57 479678 37 12061 462275 2.54 474336 38 14722 463861 3.08 478583 39 11763 458910 2.50 470673 40 12412 455080 2.66 467492 41 14565 456922 3.09 471487 42 12406 457415 2.64 469821 43 13412 451182 2.89 464594 44 14414 453675 3.08 468089 45 12225 446054 2.67 458279 46 12177 446095 2.66 458272 47 14114 442536 3.09 456650 48 11419 441505 2.52 452924 49 11810 434217 2.65 446027 50 13589 431798 3.05 445387 51 10849 426286 2.48 437135 52 12263 423881 2.81 436144 53 13802 419582 3.18 433384 54 11465 418853 2.66 430318 55 11831 413950 2.78 425781 56 13854 414120 3.24 427974 57 10613 415575 2.49 426188 58 11569 412614 2.73 424183 59 13693 413495 3.21 427188 60 10572 406358 2.54 416930 61 11766 402883 2.84 414649 62 12796 398185 3.11 410981 63 10541 393879 2.61 404420 64 11774 390643 2.93 402417 65 12791 387150 3.20 399941 66 10177 383371 2.59 393548 67 10786 380693 2.76 391479 68 12458 379008 3.18 391466 69 9770 375455 2.54 385225 70 10401 371612 2.72 382013 71 12004 369918 3.14 381922 72 9637 368643 2.55 378280 73 11292 360665 3.04 371957 74 11553 360477 3.11 372030 75 9656 356576 2.64 366232 76 10200 352927 2.81 363127 77 11802 351334 3.25 363136 78 9020 347366 2.53 356386 79 9938 345656 2.79 355594 80 11161 342598 3.15 353759 81 9267 338743 2.66 348010 82 10135 333038 2.95 343173 83 11329 333740 3.28 345069 84 9527 328438 2.82 337965 85 9074 323259 2.73 332333 86 10622 320638 3.21 331260 87 9450 315793 2.91 325243 88 9947 308309 3.13 318256 89 10495 312035 3.25 322530 90 8516 309055 2.68 317571 91 9167 306315 2.91 315482 92 9652 303254 3.08 312906 93 8048 300993 2.60 309041 94 8533 297509 2.79 306042 95 9796 292474 3.24 302270 96 7718 287223 2.62 294941 97 7733 278856 2.70 286589 98 8575 258976 3.20 267551 99 4901 179354 2.66 184255 100 5941 158908 3.60 164849 101 8516 261914 3.15 270430 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 59962 56144 51.64 116106 2 50294 44453 53.08 94747 3 54376 51231 51.49 105607 4 48521 55923 46.46 104444 5 21542 71321 23.20 92863 6 13478 39847 25.28 53325 7 11658 41520 21.92 53178 8 12148 37580 24.43 49728 9 10450 32685 24.23 43135 10 11341 35917 24.00 47258 11 12448 35173 26.14 47621 12 11878 33756 26.03 45634 13 11999 32992 26.67 44991 14 12603 34081 27.00 46684 15 12364 31002 28.51 43366 16 11745 29703 28.34 41448 17 13970 32335 30.17 46305 18 13252 31818 29.40 45070 19 12764 30952 29.20 43716 20 11703 29363 28.50 41066 21 12346 28381 30.31 40727 22 12591 29238 30.10 41829 23 11926 28138 29.77 40064 24 10899 26504 29.14 37403 25 12319 28414 30.24 40733 26 11206 26950 29.37 38156 27 12032 27578 30.38 39610 28 10979 25889 29.78 36868 29 11421 26717 29.95 38138 30 10838 24985 30.25 35823 31 10504 25393 29.26 35897 32 10130 23937 29.74 34067 33 12038 25022 32.48 37060 34 10824 26313 29.15 37137 35 13612 28432 32.38 42044 36 11144 24762 31.04 35906 37 11538 25622 31.05 37160 38 10173 23828 29.92 34001 39 10649 23911 30.81 34560 40 11744 23976 32.88 35720 41 10290 23484 30.47 33774 42 10612 24608 30.13 35220 43 9972 23736 29.58 33708 44 9611 23046 29.43 32657 45 12189 25916 31.99 38105 46 9200 21081 30.38 30281 47 9509 21647 30.52 31156 48 9438 22020 30.00 31458 49 9098 21910 29.34 31008 50 8830 20842 29.76 29672 51 8868 20393 30.31 29261 52 8713 20665 29.66 29378 53 8885 19958 30.80 28843 54 9068 20266 30.91 29334 55 9084 20397 30.81 29481 56 8369 19497 30.03 27866 57 8649 20195 29.99 28844 58 8592 19518 30.57 28110 59 8112 18390 30.61 26502 60 8380 19197 30.39 27577 61 7408 18185 28.95 25593 62 7683 17779 30.17 25462 63 8429 18061 31.82 26490 64 7847 17507 30.95 25354 65 7428 16800 30.66 24228 66 8105 17479 31.68 25584 67 7337 18133 28.81 25470 68 8114 18788 30.16 26902 69 7240 16303 30.75 23543 70 7118 16303 30.39 23421 71 7350 16054 31.40 23404 72 6857 15583 30.56 22440 73 6972 16176 30.12 23148 74 6245 15075 29.29 21320 75 6328 15172 29.43 21500 76 6579 14751 30.84 21330 77 6245 14661 29.87 20906 78 6214 15049 29.22 21263 79 5974 14779 28.79 20753 80 5876 14317 29.10 20193 81 6013 14288 29.62 20301 82 5939 14315 29.32 20254 83 6202 13672 31.21 19874 84 6838 15323 30.86 22161 85 5617 13793 28.94 19410 86 5666 13610 29.39 19276 87 5694 13297 29.98 18991 88 5669 13173 30.09 18842 89 6165 13924 30.69 20089 90 6013 13384 31.00 19397 91 5352 12967 29.22 18319 92 5365 12519 30.00 17884 93 5253 12509 29.57 17762 94 5522 12682 30.33 18204 95 5548 12405 30.90 17953 96 5361 12463 30.08 17824 97 5811 13229 30.52 19040 98 5121 11419 30.96 16540 99 4566 0 100.00 4566 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14566 70099 17.20 84665 2 14137 69802 16.84 83939 3 12831 70121 15.47 82952 4 13942 77010 15.33 90952 5 1657 138312 1.18 139969 6 1215 170678 0.71 171893 7 759 95524 0.79 96283 8 852 102088 0.83 102940 9 683 83174 0.81 83857 10 730 80036 0.90 80766 11 1014 111214 0.90 112228 12 791 86188 0.91 86979 13 801 84093 0.94 84894 14 800 80333 0.99 81133 15 701 77595 0.90 78296 16 672 72877 0.91 73549 17 772 76783 1.00 77555 18 935 68045 1.36 68980 19 731 66695 1.08 67426 20 661 66394 0.99 67055 21 888 63079 1.39 63967 22 735 70006 1.04 70741 23 706 69128 1.01 69834 24 578 61567 0.93 62145 25 580 62298 0.92 62878 26 675 65329 1.02 66004 27 634 61511 1.02 62145 28 561 59464 0.93 60025 29 644 63333 1.01 63977 30 610 60610 1.00 61220 31 561 57345 0.97 57906 32 565 59031 0.95 59596 33 695 72032 0.96 72727 34 579 57786 0.99 58365 35 617 60601 1.01 61218 36 588 61593 0.95 62181 37 516 55080 0.93 55596 38 584 59542 0.97 60126 39 611 53756 1.12 54367 40 561 53838 1.03 54399 41 543 53029 1.01 53572 42 503 50257 0.99 50760 43 517 52173 0.98 52690 44 488 50615 0.95 51103 45 489 48209 1.00 48698 46 438 48390 0.90 48828 47 506 49353 1.01 49859 48 532 47677 1.10 48209 49 514 50144 1.01 50658 50 524 47865 1.08 48389 51 511 45457 1.11 45968 52 474 44406 1.06 44880 53 498 49295 1.00 49793 54 485 45502 1.05 45987 55 472 44914 1.04 45386 56 482 44901 1.06 45383 57 575 42909 1.32 43484 58 427 42099 1.00 42526 59 471 43410 1.07 43881 60 549 42576 1.27 43125 61 448 41995 1.06 42443 62 460 44238 1.03 44698 63 467 42429 1.09 42896 64 398 39933 0.99 40331 65 430 40995 1.04 41425 66 409 38521 1.05 38930 67 441 41800 1.04 42241 68 405 39738 1.01 40143 69 393 39392 0.99 39785 70 416 39374 1.05 39790 71 407 40243 1.00 40650 72 379 37398 1.00 37777 73 351 36615 0.95 36966 74 364 37893 0.95 38257 75 355 36665 0.96 37020 76 339 34659 0.97 34998 77 360 37499 0.95 37859 78 364 34305 1.05 34669 79 333 34707 0.95 35040 80 345 33951 1.01 34296 81 313 32659 0.95 32972 82 337 32372 1.03 32709 83 327 32934 0.98 33261 84 336 32420 1.03 32756 85 347 36032 0.95 36379 86 329 32001 1.02 32330 87 307 31738 0.96 32045 88 286 30415 0.93 30701 89 340 31871 1.06 32211 90 347 31494 1.09 31841 91 320 33238 0.95 33558 92 323 30917 1.03 31240 93 272 29297 0.92 29569 94 291 29430 0.98 29721 95 336 29641 1.12 29977 96 323 28443 1.12 28766 97 309 28568 1.07 28877 98 262 28066 0.92 28328 99 197 0 100.00 197 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21343 88192 19.49 109535 2 17880 70630 20.20 88510 3 18441 73518 20.05 91959 4 17773 72560 19.67 90333 5 5358 151673 3.41 157031 6 5159 205590 2.45 210749 7 5584 281937 1.94 287521 8 5846 275036 2.08 280882 9 6101 257587 2.31 263688 10 5936 265083 2.19 271019 11 5838 261426 2.18 267264 12 5807 244916 2.32 250723 13 5607 254065 2.16 259672 14 5381 253071 2.08 258452 15 5377 261537 2.01 266914 16 5138 251823 2.00 256961 17 5291 251245 2.06 256536 18 5157 250721 2.02 255878 19 4878 230112 2.08 234990 20 5232 245923 2.08 251155 21 5006 233567 2.10 238573 22 5121 223134 2.24 228255 23 4776 219602 2.13 224378 24 4553 210339 2.12 214892 25 4849 210685 2.25 215534 26 4703 208840 2.20 213543 27 5052 227718 2.17 232770 28 4583 213447 2.10 218030 29 4629 208103 2.18 212732 30 4498 202740 2.17 207238 31 4548 197975 2.25 202523 32 4237 193303 2.14 197540 33 4335 191829 2.21 196164 34 4456 190406 2.29 194862 35 4666 198249 2.30 202915 36 4164 194170 2.10 198334 37 4137 193928 2.09 198065 38 4328 205238 2.07 209566 39 4278 185114 2.26 189392 40 4167 195679 2.09 199846 41 4050 182594 2.17 186644 42 4210 189083 2.18 193293 43 4209 177829 2.31 182038 44 3790 175161 2.12 178951 45 3887 177467 2.14 181354 46 3741 178676 2.05 182417 47 3746 174193 2.11 177939 48 3621 171032 2.07 174653 49 3598 175598 2.01 179196 50 3692 170920 2.11 174612 51 3606 166646 2.12 170252 52 3509 158256 2.17 161765 53 3324 158617 2.05 161941 54 3230 155949 2.03 159179 55 3347 163013 2.01 166360 56 3253 156242 2.04 159495 57 3177 162297 1.92 165474 58 3105 155112 1.96 158217 59 3205 148235 2.12 151440 60 3308 154264 2.10 157572 61 3210 146013 2.15 149223 62 3068 144935 2.07 148003 63 3006 146529 2.01 149535 64 2981 141791 2.06 144772 65 2867 144427 1.95 147294 66 3061 138434 2.16 141495 67 2730 139182 1.92 141912 68 2863 145723 1.93 148586 69 2932 140670 2.04 143602 70 2683 133281 1.97 135964 71 2804 132836 2.07 135640 72 2697 131962 2.00 134659 73 2738 130292 2.06 133030 74 2581 131639 1.92 134220 75 2562 130274 1.93 132836 76 2461 124361 1.94 126822 77 2548 124933 2.00 127481 78 2571 124836 2.02 127407 79 2546 127918 1.95 130464 80 2474 122412 1.98 124886 81 2594 123215 2.06 125809 82 2496 121118 2.02 123614 83 2509 120366 2.04 122875 84 2501 119067 2.06 121568 85 2397 117806 1.99 120203 86 2336 117232 1.95 119568 87 2337 116495 1.97 118832 88 2220 111575 1.95 113795 89 2314 111400 2.03 113714 90 2317 111768 2.03 114085 91 2297 111349 2.02 113646 92 2116 109214 1.90 111330 93 2129 107943 1.93 110072 94 2069 107725 1.88 109794 95 2080 105474 1.93 107554 96 1931 102863 1.84 104794 97 1896 103199 1.80 105095 98 1567 99130 1.56 100697 99 1182 0 100.00 1182