/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-194_S23_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-194_S23_L003_R2_001_val_2.fq.gz
Data processed at 02:53 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
27459153
Paired-end alignments with a unique best hit
11624042
Pairs without alignments under any condition
13557404
Pairs that did not map uniquely
2277707
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
360459395
Methylated C's in CpG context
15208121
Methylated C's in CHG context
1730704
Methylated C's in CHH context
4696700
Methylated C's in Unknown context
66894
Unmethylated C's in CpG context
35095565
Unmethylated C's in CHG context
75921624
Unmethylated C's in CHH context
227806681
Unmethylated C's in Unknown context
771714
Percentage methylation (CpG context)
30.2%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
2.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5726606
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5897436
original bottom strand
Deduplication
Alignments analysed
11624042
Unique alignments
9000946
Duplicates removed
2623096
Duplicated alignments were found at 1648237 different positions
