CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 94256 168345 35.89 262601 2 89162 185387 32.48 274549 3 85937 165427 34.19 251364 4 89134 136176 39.56 225310 5 87097 117390 42.59 204487 6 88026 97224 47.52 185250 7 98643 96472 50.56 195115 8 48890 107933 31.18 156823 9 44216 100767 30.50 144983 10 44432 97856 31.23 142288 11 46012 99416 31.64 145428 12 44938 100807 30.83 145745 13 44770 103175 30.26 147945 14 42098 102378 29.14 144476 15 41408 102941 28.69 144349 16 39657 102457 27.91 142114 17 37289 99707 27.22 136996 18 38259 101691 27.34 139950 19 38085 102685 27.05 140770 20 38735 103450 27.24 142185 21 38417 103633 27.04 142050 22 37858 102371 27.00 140229 23 38204 101590 27.33 139794 24 37394 102402 26.75 139796 25 36659 101000 26.63 137659 26 36973 99402 27.11 136375 27 36652 102502 26.34 139154 28 37845 100934 27.27 138779 29 36438 102138 26.29 138576 30 35874 100313 26.34 136187 31 36684 98927 27.05 135611 32 35834 97060 26.96 132894 33 36141 97342 27.08 133483 34 36331 96883 27.27 133214 35 36349 96163 27.43 132512 36 35641 96774 26.92 132415 37 34964 95151 26.87 130115 38 34359 94324 26.70 128683 39 35620 96558 26.95 132178 40 35099 94017 27.18 129116 41 34941 93752 27.15 128693 42 35096 95280 26.92 130376 43 34953 92777 27.36 127730 44 34356 92296 27.13 126652 45 34384 92001 27.21 126385 46 34597 92868 27.14 127465 47 34213 89801 27.59 124014 48 33441 89850 27.12 123291 49 34422 89814 27.71 124236 50 33768 90557 27.16 124325 51 33425 89958 27.09 123383 52 33889 91847 26.95 125736 53 32385 87459 27.02 119844 54 31826 86119 26.98 117945 55 31861 83493 27.62 115354 56 30976 82189 27.37 113165 57 31094 83657 27.10 114751 58 31342 83016 27.41 114358 59 30718 81461 27.38 112179 60 29839 80819 26.97 110658 61 30266 79467 27.58 109733 62 29520 79884 26.98 109404 63 28935 78472 26.94 107407 64 28737 77979 26.93 106716 65 28540 76705 27.12 105245 66 29004 76457 27.50 105461 67 28639 74955 27.65 103594 68 27443 74303 26.97 101746 69 27552 73631 27.23 101183 70 27134 73403 26.99 100537 71 26066 71862 26.62 97928 72 26152 71050 26.90 97202 73 25958 69532 27.18 95490 74 25517 68735 27.07 94252 75 24902 67886 26.84 92788 76 24451 66620 26.85 91071 77 24412 66399 26.88 90811 78 23972 66697 26.44 90669 79 23831 64780 26.89 88611 80 23376 64647 26.56 88023 81 23313 64222 26.63 87535 82 22697 62938 26.50 85635 83 22713 62904 26.53 85617 84 22747 62202 26.78 84949 85 21999 61656 26.30 83655 86 21587 59977 26.47 81564 87 20958 59271 26.12 80229 88 20631 58272 26.15 78903 89 20559 58770 25.92 79329 90 20597 57727 26.30 78324 91 20204 57084 26.14 77288 92 19866 56341 26.07 76207 93 19444 55800 25.84 75244 94 19668 55389 26.20 75057 95 19289 54763 26.05 74052 96 19215 55460 25.73 74675 97 18790 53084 26.14 71874 98 17295 49794 25.78 67089 99 13856 39122 26.15 52978 100 17493 49332 26.18 66825 101 16256 49125 24.86 65381 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 129364 215930 37.46 345294 2 74609 201768 27.00 276377 3 33154 196556 14.43 229710 4 17125 196039 8.03 213164 5 10834 177888 5.74 188722 6 10279 170379 5.69 180658 7 6843 207042 3.20 213885 8 3243 223412 1.43 226655 9 2669 212894 1.24 215563 10 2727 205551 1.31 208278 11 2719 205173 1.31 207892 12 2729 203922 1.32 206651 13 2443 198564 1.22 201007 14 2280 197475 1.14 199755 15 2290 202843 1.12 205133 16 2079 202454 1.02 204533 17 2157 199720 1.07 201877 18 2122 197826 1.06 199948 19 1982 198098 0.99 200080 20 2062 205438 0.99 207500 21 2138 207117 1.02 209255 22 2182 205821 1.05 208003 23 2198 209396 1.04 211594 24 2170 208103 1.03 210273 25 2373 202625 1.16 204998 26 2414 205840 1.16 208254 27 2267 206999 1.08 209266 28 2150 205653 1.03 207803 29 2273 207961 1.08 210234 30 2265 209703 1.07 211968 31 2277 203947 1.10 206224 32 2449 205215 1.18 207664 33 2341 205410 1.13 207751 34 2341 202020 1.15 204361 35 2496 201827 1.22 204323 36 2290 202406 1.12 204696 37 2343 197121 1.17 199464 38 2478 198906 1.23 201384 39 2381 197017 1.19 199398 40 2336 197474 1.17 199810 41 2319 196667 1.17 198986 42 2386 195218 1.21 197604 43 2445 192157 1.26 194602 44 2451 193820 1.25 196271 45 2435 192298 1.25 194733 46 2487 189087 1.30 191574 47 2553 188388 1.34 190941 48 2581 192595 1.32 195176 49 2494 186883 1.32 189377 50 2541 186679 1.34 189220 51 2514 186791 1.33 189305 52 2586 185068 1.38 187654 53 2567 181522 1.39 184089 54 2644 182220 1.43 184864 55 2507 178949 1.38 181456 56 2531 179208 1.39 181739 57 2524 177486 1.40 180010 58 2577 175738 1.45 178315 59 2555 173998 1.45 176553 60 2491 173281 1.42 175772 61 2419 171366 1.39 173785 62 2587 171034 1.49 173621 63 2441 168754 1.43 171195 64 2432 168178 1.43 170610 65 2602 166560 1.54 169162 66 2491 162620 1.51 165111 67 2284 158202 1.42 160486 68 2564 158082 1.60 160646 69 2296 156376 1.45 158672 70 2352 153363 1.51 155715 71 2358 152247 1.53 154605 72 2301 151254 1.50 153555 73 2172 149141 1.44 151313 74 2328 147312 1.56 149640 75 2166 145961 1.46 148127 76 2309 141738 1.60 144047 77 2285 142017 1.58 144302 78 2039 140024 1.44 142063 79 2222 136822 1.60 139044 80 2033 135201 1.48 137234 81 1956 133960 1.44 135916 82 1986 131524 1.49 133510 83 2060 133351 1.52 135411 84 2166 131582 1.62 133748 85 2016 130117 1.53 132133 86 2054 129564 1.56 131618 87 2269 128325 1.74 130594 88 2566 123511 2.04 126077 89 1974 124381 1.56 126355 90 2012 123651 1.60 125663 91 1910 122181 1.54 124091 92 1888 122707 1.52 124595 93 2011 119581 1.65 121592 94 1910 117146 1.60 119056 95 1926 116205 1.63 118131 96 1945 114750 1.67 116695 97 1847 104584 1.74 106431 98 1618 96117 1.66 97735 99 1063 62420 1.67 63483 100 1292 63605 1.99 64897 101 2515 104384 2.35 106899 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 152075 296445 33.91 448520 2 75490 312151 19.47 387641 3 39210 355817 9.93 395027 4 31898 379385 7.76 411283 5 29977 444429 6.32 474406 6 24211 482891 4.77 507102 7 20329 594232 3.31 614561 8 13422 639638 2.06 653060 9 10548 591813 1.75 602361 10 10415 576454 1.77 586869 11 12000 575087 2.04 587087 12 10243 579320 1.74 589563 13 11173 588055 1.86 599228 14 12000 600602 1.96 612602 15 10665 613881 1.71 624546 16 10734 619442 1.70 630176 17 11835 621702 1.87 633537 18 10673 643606 1.63 654279 19 10593 653378 1.60 663971 20 12005 673088 1.75 685093 21 10811 673833 1.58 684644 22 11251 674448 1.64 685699 23 12321 675576 1.79 687897 24 11008 675442 1.60 686450 25 12322 676420 1.79 688742 26 12579 681483 1.81 694062 27 11148 684857 1.60 696005 28 10916 683885 1.57 694801 29 12214 682028 1.76 694242 30 10964 674578 1.60 685542 31 10837 664083 1.61 674920 32 12467 660584 1.85 673051 33 10699 662249 1.59 672948 34 11484 664104 1.70 675588 35 12113 654840 1.82 666953 36 10762 659620 1.61 670382 37 10335 653847 1.56 664182 38 11735 652292 1.77 664027 39 10394 644843 1.59 655237 40 10441 641408 1.60 651849 41 11667 641854 1.79 653521 42 10791 642678 1.65 653469 43 10885 633008 1.69 643893 44 11354 633956 1.76 645310 45 10486 625660 1.65 636146 46 10465 622665 1.65 633130 47 11184 616703 1.78 627887 48 10055 615072 1.61 625127 49 10068 604267 1.64 614335 50 10762 600181 1.76 610943 51 9713 591170 1.62 600883 52 10087 586264 1.69 596351 53 10924 576682 1.86 587606 54 9926 576484 1.69 586410 55 10045 569957 1.73 580002 56 10740 566661 1.86 577401 57 9493 569907 1.64 579400 58 9505 564009 1.66 573514 59 10585 561598 1.85 572183 60 9235 551380 1.65 560615 61 9778 545823 1.76 555601 62 10037 537248 1.83 547285 63 9145 530996 1.69 540141 64 9644 525760 1.80 535404 65 9956 521035 1.87 530991 66 8799 514502 1.68 523301 67 9131 509838 1.76 518969 68 9517 504909 1.85 514426 69 8463 499284 1.67 507747 70 8453 495404 1.68 503857 71 9280 490489 1.86 499769 72 8251 486617 1.67 494868 73 8903 477112 1.83 486015 74 9232 475458 1.90 484690 75 8081 469787 1.69 477868 76 8857 465586 1.87 474443 77 8936 460855 1.90 469791 78 7601 454876 1.64 462477 79 8101 450972 1.76 459073 80 8724 447076 1.91 455800 81 7704 440463 1.72 448167 82 8003 434871 1.81 442874 83 8648 432399 1.96 441047 84 7957 425379 1.84 433336 85 7415 421072 1.73 428487 86 8231 414294 1.95 422525 87 8093 409621 1.94 417714 88 8876 398223 2.18 407099 89 8149 401262 1.99 409411 90 7073 399256 1.74 406329 91 7072 392922 1.77 399994 92 7563 391587 1.89 399150 93 7021 385278 1.79 392299 94 6851 380353 1.77 387204 95 7650 373567 2.01 381217 96 6530 366471 1.75 373001 97 6335 355578 1.75 361913 98 6695 330572 1.99 337267 99 4178 227860 1.80 232038 100 4479 202903 2.16 207382 101 6741 333039 1.98 339780 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 59765 67873 46.82 127638 2 51498 58341 46.88 109839 3 57171 66269 46.31 123440 4 52252 75609 40.87 127861 5 23270 97751 19.23 121021 6 14065 52774 21.04 66839 7 12103 55229 17.98 67332 8 12639 51105 19.83 63744 9 11238 44899 20.02 56137 10 12258 49101 19.98 61359 11 13089 47826 21.49 60915 12 12777 45537 21.91 58314 13 13003 44274 22.70 57277 14 13742 45007 23.39 58749 15 13447 41313 24.56 54760 16 12444 39693 23.87 52137 17 14603 43476 25.14 58079 18 14157 42001 25.21 56158 19 13700 40148 25.44 53848 20 12629 39243 24.35 51872 21 13331 38240 25.85 51571 22 13283 39035 25.39 52318 23 12579 37150 25.30 49729 24 11682 35341 24.84 47023 25 12916 37898 25.42 50814 26 11979 35278 25.35 47257 27 12534 36415 25.61 48949 28 11920 34229 25.83 46149 29 12173 35452 25.56 47625 30 11894 33038 26.47 44932 31 11334 33254 25.42 44588 32 10884 31761 25.52 42645 33 12279 32125 27.65 44404 34 11495 33575 25.50 45070 35 13438 35589 27.41 49027 36 11485 31896 26.47 43381 37 11614 32091 26.57 43705 38 10607 31205 25.37 41812 39 11163 30687 26.67 41850 40 11768 30571 27.79 42339 41 10768 30507 26.09 41275 42 10600 30927 25.53 41527 43 10562 29975 26.06 40537 44 9972 29276 25.41 39248 45 11798 31818 27.05 43616 46 9618 27256 26.08 36874 47 9969 27002 26.96 36971 48 9768 27407 26.28 37175 49 9567 28101 25.40 37668 50 9063 25746 26.04 34809 51 9031 25695 26.01 34726 52 9065 26198 25.71 35263 53 9190 25432 26.54 34622 54 9080 25605 26.18 34685 55 9181 25458 26.50 34639 56 8580 24953 25.59 33533 57 8772 24985 25.99 33757 58 8790 24014 26.80 32804 59 8293 23200 26.33 31493 60 8676 23445 27.01 32121 61 7596 22584 25.17 30180 62 7800 22296 25.92 30096 63 8410 22127 27.54 30537 64 7906 21935 26.49 29841 65 7788 20651 27.38 28439 66 8058 21714 27.07 29772 67 7473 21746 25.58 29219 68 8098 22408 26.55 30506 69 7335 19886 26.95 27221 70 7075 20073 26.06 27148 71 7340 19319 27.53 26659 72 6872 19019 26.54 25891 73 6743 19652 25.55 26395 74 6292 18526 25.35 24818 75 6420 18427 25.84 24847 76 6338 18014 26.03 24352 77 6519 17970 26.62 24489 78 6389 17908 26.30 24297 79 6113 17787 25.58 23900 80 6087 17404 25.91 23491 81 5948 17145 25.76 23093 82 5971 17010 25.98 22981 83 6105 16293 27.26 22398 84 6496 18027 26.49 24523 85 5856 16459 26.24 22315 86 5690 16295 25.88 21985 87 5748 15917 26.53 21665 88 5651 15766 26.39 21417 89 5718 16006 26.32 21724 90 5727 15924 26.45 21651 91 5376 15751 25.45 21127 92 5239 14872 26.05 20111 93 5273 15097 25.89 20370 94 5431 15039 26.53 20470 95 5238 14748 26.21 19986 96 5216 14925 25.90 20141 97 5482 15288 26.39 20770 98 4990 13822 26.53 18812 99 4446 0 100.00 4446 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18010 87972 16.99 105982 2 18376 88401 17.21 106777 3 16557 90398 15.48 106955 4 18175 94015 16.20 112190 5 1826 175655 1.03 177481 6 1426 215813 0.66 217239 7 842 117710 0.71 118552 8 876 123944 0.70 124820 9 775 104034 0.74 104809 10 757 99858 0.75 100615 11 1017 130524 0.77 131541 12 848 105310 0.80 106158 13 774 103886 0.74 104660 14 827 99672 0.82 100499 15 816 95086 0.85 95902 16 736 88820 0.82 89556 17 833 94316 0.88 95149 18 891 84321 1.05 85212 19 746 82314 0.90 83060 20 721 81425 0.88 82146 21 856 78342 1.08 79198 22 712 83745 0.84 84457 23 731 82796 0.88 83527 24 640 75502 0.84 76142 25 646 76469 0.84 77115 26 693 79508 0.86 80201 27 686 75499 0.90 76185 28 606 70649 0.85 71255 29 724 75285 0.95 76009 30 617 73289 0.83 73906 31 567 69998 0.80 70565 32 614 71280 0.85 71894 33 652 82064 0.79 82716 34 540 69584 0.77 70124 35 605 71111 0.84 71716 36 567 71647 0.79 72214 37 540 66150 0.81 66690 38 612 68205 0.89 68817 39 534 64956 0.82 65490 40 532 64024 0.82 64556 41 543 61985 0.87 62528 42 516 59197 0.86 59713 43 548 60524 0.90 61072 44 528 59805 0.88 60333 45 482 56922 0.84 57404 46 468 56944 0.82 57412 47 518 58431 0.88 58949 48 547 56086 0.97 56633 49 496 57946 0.85 58442 50 492 55620 0.88 56112 51 488 52487 0.92 52975 52 523 52352 0.99 52875 53 539 57744 0.92 58283 54 478 52977 0.89 53455 55 465 52114 0.88 52579 56 512 52590 0.96 53102 57 521 49852 1.03 50373 58 446 49217 0.90 49663 59 424 49617 0.85 50041 60 495 48716 1.01 49211 61 422 48392 0.86 48814 62 462 49216 0.93 49678 63 484 48841 0.98 49325 64 441 46194 0.95 46635 65 425 46939 0.90 47364 66 408 44346 0.91 44754 67 363 47111 0.76 47474 68 400 45501 0.87 45901 69 409 45791 0.89 46200 70 402 44962 0.89 45364 71 424 45306 0.93 45730 72 374 42658 0.87 43032 73 329 41752 0.78 42081 74 355 43248 0.81 43603 75 338 40775 0.82 41113 76 347 40215 0.86 40562 77 405 41407 0.97 41812 78 342 39216 0.86 39558 79 346 38905 0.88 39251 80 338 38144 0.88 38482 81 325 37238 0.87 37563 82 313 36296 0.85 36609 83 327 36774 0.88 37101 84 322 35798 0.89 36120 85 340 39063 0.86 39403 86 316 35507 0.88 35823 87 323 35525 0.90 35848 88 284 33669 0.84 33953 89 317 34819 0.90 35136 90 319 34664 0.91 34983 91 313 35479 0.87 35792 92 288 34047 0.84 34335 93 331 32788 1.00 33119 94 297 32226 0.91 32523 95 317 33216 0.95 33533 96 317 31571 0.99 31888 97 286 31179 0.91 31465 98 241 30654 0.78 30895 99 209 0 100.00 209 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 26165 121470 17.72 147635 2 20904 99221 17.40 120125 3 21251 99523 17.60 120774 4 20358 95378 17.59 115736 5 3857 190886 1.98 194743 6 3906 260499 1.48 264405 7 4218 358236 1.16 362454 8 4411 352808 1.23 357219 9 4775 330967 1.42 335742 10 4363 339568 1.27 343931 11 4418 333660 1.31 338078 12 4587 312068 1.45 316655 13 4306 321604 1.32 325910 14 4101 321929 1.26 326030 15 4221 326743 1.28 330964 16 4039 312145 1.28 316184 17 4061 309457 1.30 313518 18 4165 307999 1.33 312164 19 3747 288463 1.28 292210 20 3865 302077 1.26 305942 21 3912 286869 1.35 290781 22 3820 278073 1.36 281893 23 3655 272206 1.32 275861 24 3601 262217 1.35 265818 25 3775 260394 1.43 264169 26 3610 258104 1.38 261714 27 3931 274794 1.41 278725 28 3427 262172 1.29 265599 29 3665 254524 1.42 258189 30 3749 248694 1.49 252443 31 3293 245442 1.32 248735 32 3300 238415 1.37 241715 33 3404 235342 1.43 238746 34 3386 232033 1.44 235419 35 3566 239694 1.47 243260 36 3195 236430 1.33 239625 37 3148 234415 1.33 237563 38 3294 244310 1.33 247604 39 3372 225365 1.47 228737 40 3163 234436 1.33 237599 41 3131 222230 1.39 225361 42 3197 226613 1.39 229810 43 3049 215739 1.39 218788 44 2935 213885 1.35 216820 45 3014 213792 1.39 216806 46 2877 216576 1.31 219453 47 2814 210493 1.32 213307 48 2997 206639 1.43 209636 49 2709 209587 1.28 212296 50 2842 206871 1.36 209713 51 2850 202150 1.39 205000 52 2639 192222 1.35 194861 53 2640 191520 1.36 194160 54 2492 187683 1.31 190175 55 2604 192458 1.33 195062 56 2450 185390 1.30 187840 57 2575 191314 1.33 193889 58 2397 184392 1.28 186789 59 2429 177784 1.35 180213 60 2665 182334 1.44 184999 61 2427 175050 1.37 177477 62 2209 173585 1.26 175794 63 2330 172790 1.33 175120 64 2236 168230 1.31 170466 65 2192 169455 1.28 171647 66 2273 163301 1.37 165574 67 2048 163687 1.24 165735 68 2158 168105 1.27 170263 69 2148 163280 1.30 165428 70 2115 157927 1.32 160042 71 2076 155511 1.32 157587 72 2141 154698 1.37 156839 73 2015 152664 1.30 154679 74 1892 153335 1.22 155227 75 1985 151881 1.29 153866 76 1899 146822 1.28 148721 77 1929 145256 1.31 147185 78 1952 145698 1.32 147650 79 1833 147872 1.22 149705 80 1871 142344 1.30 144215 81 1951 141522 1.36 143473 82 1861 139357 1.32 141218 83 1829 138211 1.31 140040 84 1842 136565 1.33 138407 85 1777 135234 1.30 137011 86 1763 134379 1.29 136142 87 1819 132834 1.35 134653 88 1649 129300 1.26 130949 89 1774 128131 1.37 129905 90 1787 127921 1.38 129708 91 1712 126525 1.34 128237 92 1631 125553 1.28 127184 93 1554 124142 1.24 125696 94 1557 121829 1.26 123386 95 1537 120677 1.26 122214 96 1454 117809 1.22 119263 97 1496 117954 1.25 119450 98 1242 112217 1.09 113459 99 907 0 100.00 907