/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-185_S19_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-185_S19_L003_R2_001_val_2.fq.gz
Data processed at 02:53 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
11003725
Paired-end alignments with a unique best hit
4103253
Pairs without alignments under any condition
6008199
Pairs that did not map uniquely
892273
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
125649607
Methylated C's in CpG context
4647874
Methylated C's in CHG context
682027
Methylated C's in CHH context
3288445
Methylated C's in Unknown context
50440
Unmethylated C's in CpG context
13300931
Unmethylated C's in CHG context
26446504
Unmethylated C's in CHH context
77283826
Unmethylated C's in Unknown context
276168
Percentage methylation (CpG context)
25.9%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
4.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2013443
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
2089810
original bottom strand
Deduplication
Alignments analysed
4103253
Unique alignments
2766273
Duplicates removed
1336980
Duplicated alignments were found at 804018 different positions