EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 10266522 lines in total Total number of methylation call strings processed: 20533044 Final Cytosine Methylation Report ================================= Total number of C's analysed: 222524486 Total methylated C's in CpG context: 8754862 Total methylated C's in CHG context: 1102130 Total methylated C's in CHH context: 2694418 Total C to T conversions in CpG context: 21458168 Total C to T conversions in CHG context: 44943458 Total C to T conversions in CHH context: 143571450 C methylated in CpG context: 29.0% C methylated in CHG context: 2.4% C methylated in CHH context: 1.8%