/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-182_S17_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-182_S17_L003_R2_001_val_2.fq.gz
Data processed at 02:53 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
31499315
Paired-end alignments with a unique best hit
13143700
Pairs without alignments under any condition
15672601
Pairs that did not map uniquely
2683014
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
407184402
Methylated C's in CpG context
14617019
Methylated C's in CHG context
1959865
Methylated C's in CHH context
4544903
Methylated C's in Unknown context
72663
Unmethylated C's in CpG context
40997905
Unmethylated C's in CHG context
84917152
Unmethylated C's in CHH context
260147558
Unmethylated C's in Unknown context
900486
Percentage methylation (CpG context)
26.3%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6520043
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6623657
original bottom strand
Deduplication
Alignments analysed
13143700
Unique alignments
10266522
Duplicates removed
2877178
Duplicated alignments were found at 1635843 different positions
